Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1715

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1714 and GFF1715 are separated by 7 nucleotidesGFF1715 and GFF1716 are separated by 160 nucleotides GFF1714 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 569,319 to 570,455 GFF1714 GFF1715 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 570,463 to 572,085 GFF1715 GFF1716 - Transcriptional regulator, AraC family, at 572,246 to 573,247 GFF1716 Position (kb) 570 571 572 573Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 569.554 kb on + strand, within GFF1714at 569.554 kb on + strand, within GFF1714at 569.554 kb on + strand, within GFF1714at 569.554 kb on + strand, within GFF1714at 569.554 kb on + strand, within GFF1714at 569.554 kb on + strand, within GFF1714at 569.555 kb on - strand, within GFF1714at 569.555 kb on - strand, within GFF1714at 569.555 kb on - strand, within GFF1714at 569.555 kb on - strand, within GFF1714at 569.662 kb on + strand, within GFF1714at 569.662 kb on + strand, within GFF1714at 569.662 kb on + strand, within GFF1714at 569.662 kb on + strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.755 kb on + strand, within GFF1714at 569.755 kb on + strand, within GFF1714at 569.755 kb on + strand, within GFF1714at 569.756 kb on - strand, within GFF1714at 569.756 kb on - strand, within GFF1714at 569.756 kb on - strand, within GFF1714at 569.756 kb on - strand, within GFF1714at 569.756 kb on - strand, within GFF1714at 569.756 kb on - strand, within GFF1714at 569.950 kb on + strand, within GFF1714at 569.950 kb on + strand, within GFF1714at 569.950 kb on + strand, within GFF1714at 569.950 kb on + strand, within GFF1714at 569.950 kb on + strand, within GFF1714at 569.951 kb on - strand, within GFF1714at 569.951 kb on - strand, within GFF1714at 569.951 kb on - strand, within GFF1714at 569.951 kb on - strand, within GFF1714at 570.119 kb on - strand, within GFF1714at 570.119 kb on - strand, within GFF1714at 570.119 kb on - strand, within GFF1714at 570.119 kb on - strand, within GFF1714at 570.119 kb on - strand, within GFF1714at 570.439 kb on + strandat 570.439 kb on + strandat 570.439 kb on + strandat 570.439 kb on + strandat 570.439 kb on + strandat 570.439 kb on + strandat 570.439 kb on + strandat 570.439 kb on + strandat 570.440 kb on - strandat 570.440 kb on - strandat 570.440 kb on - strandat 570.440 kb on - strandat 570.440 kb on - strandat 570.504 kb on + strandat 570.504 kb on + strandat 570.505 kb on - strandat 570.505 kb on - strandat 570.505 kb on - strandat 570.505 kb on - strandat 570.505 kb on - strandat 570.505 kb on - strandat 570.505 kb on - strandat 570.593 kb on + strandat 570.593 kb on + strandat 570.593 kb on + strandat 570.593 kb on + strandat 570.594 kb on - strandat 570.594 kb on - strandat 570.596 kb on + strandat 570.596 kb on + strandat 570.596 kb on + strandat 570.596 kb on + strandat 570.597 kb on - strandat 570.597 kb on - strandat 570.597 kb on - strandat 570.597 kb on - strandat 570.806 kb on + strand, within GFF1715at 570.806 kb on + strand, within GFF1715at 570.806 kb on + strand, within GFF1715at 570.806 kb on + strand, within GFF1715at 570.806 kb on + strand, within GFF1715at 570.807 kb on - strand, within GFF1715at 570.807 kb on - strand, within GFF1715at 570.821 kb on + strand, within GFF1715at 570.821 kb on + strand, within GFF1715at 570.821 kb on + strand, within GFF1715at 570.821 kb on + strand, within GFF1715at 570.821 kb on + strand, within GFF1715at 570.821 kb on + strand, within GFF1715at 570.821 kb on + strand, within GFF1715at 570.821 kb on + strand, within GFF1715at 570.822 kb on - strand, within GFF1715at 570.822 kb on - strand, within GFF1715at 570.822 kb on - strand, within GFF1715at 570.822 kb on - strand, within GFF1715at 570.822 kb on - strand, within GFF1715at 570.822 kb on - strand, within GFF1715at 570.822 kb on - strand, within GFF1715at 570.917 kb on + strand, within GFF1715at 570.917 kb on + strand, within GFF1715at 570.917 kb on + strand, within GFF1715at 570.917 kb on + strand, within GFF1715at 570.918 kb on - strand, within GFF1715at 570.918 kb on - strand, within GFF1715at 570.918 kb on - strand, within GFF1715at 570.918 kb on - strand, within GFF1715at 571.104 kb on - strand, within GFF1715at 571.104 kb on - strand, within GFF1715at 571.170 kb on - strand, within GFF1715at 571.490 kb on + strand, within GFF1715at 571.491 kb on - strand, within GFF1715at 571.491 kb on - strand, within GFF1715at 571.491 kb on - strand, within GFF1715at 571.491 kb on - strand, within GFF1715at 571.491 kb on - strand, within GFF1715at 571.491 kb on - strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.569 kb on - strand, within GFF1715at 571.569 kb on - strand, within GFF1715at 571.569 kb on - strand, within GFF1715at 571.569 kb on - strand, within GFF1715at 571.649 kb on + strand, within GFF1715at 571.649 kb on + strand, within GFF1715at 571.649 kb on + strand, within GFF1715at 571.649 kb on + strand, within GFF1715at 571.650 kb on - strand, within GFF1715at 571.650 kb on - strand, within GFF1715at 571.650 kb on - strand, within GFF1715at 571.718 kb on + strand, within GFF1715at 571.719 kb on - strand, within GFF1715at 571.719 kb on - strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.841 kb on + strand, within GFF1715at 571.841 kb on + strand, within GFF1715at 571.841 kb on + strand, within GFF1715at 571.841 kb on + strand, within GFF1715at 571.842 kb on - strand, within GFF1715at 571.842 kb on - strand, within GFF1715at 571.842 kb on - strand, within GFF1715at 571.842 kb on - strand, within GFF1715at 571.842 kb on - strand, within GFF1715at 572.125 kb on + strandat 572.125 kb on + strandat 572.126 kb on - strandat 572.126 kb on - strandat 572.126 kb on - strandat 572.126 kb on - strandat 572.167 kb on + strandat 572.167 kb on + strandat 572.210 kb on - strandat 572.258 kb on + strandat 572.259 kb on - strandat 572.441 kb on + strand, within GFF1716at 572.441 kb on + strand, within GFF1716at 572.441 kb on + strand, within GFF1716at 572.441 kb on + strand, within GFF1716at 572.441 kb on + strand, within GFF1716at 572.441 kb on + strand, within GFF1716at 572.442 kb on - strand, within GFF1716at 572.442 kb on - strand, within GFF1716at 572.442 kb on - strand, within GFF1716at 572.442 kb on - strand, within GFF1716at 572.442 kb on - strand, within GFF1716at 572.663 kb on + strand, within GFF1716at 572.664 kb on - strand, within GFF1716at 572.664 kb on - strand, within GFF1716at 572.664 kb on - strand, within GFF1716at 572.732 kb on + strand, within GFF1716at 572.732 kb on + strand, within GFF1716at 572.802 kb on - strand, within GFF1716at 572.802 kb on - strand, within GFF1716at 572.883 kb on - strand, within GFF1716

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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569,554 + GFF1714 0.21 +1.0
569,554 + GFF1714 0.21 -0.3
569,554 + GFF1714 0.21 +0.2
569,554 + GFF1714 0.21 -1.6
569,554 + GFF1714 0.21 -0.3
569,554 + GFF1714 0.21 +0.7
569,555 - GFF1714 0.21 +1.3
569,555 - GFF1714 0.21 -0.3
569,555 - GFF1714 0.21 +0.9
569,555 - GFF1714 0.21 +0.6
569,662 + GFF1714 0.30 -2.2
569,662 + GFF1714 0.30 -0.2
569,662 + GFF1714 0.30 -2.2
569,662 + GFF1714 0.30 +1.4
569,663 - GFF1714 0.30 -0.0
569,663 - GFF1714 0.30 +1.7
569,663 - GFF1714 0.30 +1.7
569,663 - GFF1714 0.30 -0.1
569,663 - GFF1714 0.30 +0.3
569,663 - GFF1714 0.30 +1.2
569,663 - GFF1714 0.30 +0.5
569,663 - GFF1714 0.30 -0.9
569,663 - GFF1714 0.30 -0.2
569,663 - GFF1714 0.30 +0.2
569,663 - GFF1714 0.30 -0.3
569,755 + GFF1714 0.38 -0.1
569,755 + GFF1714 0.38 +0.0
569,755 + GFF1714 0.38 +0.5
569,756 - GFF1714 0.38 +1.7
569,756 - GFF1714 0.38 +1.2
569,756 - GFF1714 0.38 +0.4
569,756 - GFF1714 0.38 -0.1
569,756 - GFF1714 0.38 +0.6
569,756 - GFF1714 0.38 +0.7
569,950 + GFF1714 0.55 -0.0
569,950 + GFF1714 0.55 +1.5
569,950 + GFF1714 0.55 +0.5
569,950 + GFF1714 0.55 +0.6
569,950 + GFF1714 0.55 +0.6
569,951 - GFF1714 0.56 +0.5
569,951 - GFF1714 0.56 -0.1
569,951 - GFF1714 0.56 -0.2
569,951 - GFF1714 0.56 -0.0
570,119 - GFF1714 0.70 -1.0
570,119 - GFF1714 0.70 +2.5
570,119 - GFF1714 0.70 -0.3
570,119 - GFF1714 0.70 -0.8
570,119 - GFF1714 0.70 -1.2
570,439 + -1.3
570,439 + -0.9
570,439 + -1.4
570,439 + -1.0
570,439 + -0.8
570,439 + -1.3
570,439 + -1.0
570,439 + -1.6
570,440 - +0.5
570,440 - -0.4
570,440 - -1.3
570,440 - +0.1
570,440 - +0.6
570,504 + -0.0
570,504 + -1.3
570,505 - -0.8
570,505 - -1.2
570,505 - -0.0
570,505 - -0.0
570,505 - -1.7
570,505 - -0.6
570,505 - +0.5
570,593 + -1.4
570,593 + -0.5
570,593 + -2.7
570,593 + -1.3
570,594 - -1.9
570,594 - +0.5
570,596 + -2.6
570,596 + -0.4
570,596 + +1.1
570,596 + -1.9
570,597 - -1.0
570,597 - -1.6
570,597 - +1.0
570,597 - -1.1
570,806 + GFF1715 0.21 -1.5
570,806 + GFF1715 0.21 -0.4
570,806 + GFF1715 0.21 -0.8
570,806 + GFF1715 0.21 -1.4
570,806 + GFF1715 0.21 +0.7
570,807 - GFF1715 0.21 -2.9
570,807 - GFF1715 0.21 -0.4
570,821 + GFF1715 0.22 -2.3
570,821 + GFF1715 0.22 -1.8
570,821 + GFF1715 0.22 +0.0
570,821 + GFF1715 0.22 -0.9
570,821 + GFF1715 0.22 -1.4
570,821 + GFF1715 0.22 -2.6
570,821 + GFF1715 0.22 -0.5
570,821 + GFF1715 0.22 -1.7
570,822 - GFF1715 0.22 -2.0
570,822 - GFF1715 0.22 -2.0
570,822 - GFF1715 0.22 -1.6
570,822 - GFF1715 0.22 -0.8
570,822 - GFF1715 0.22 +1.0
570,822 - GFF1715 0.22 -0.6
570,822 - GFF1715 0.22 +0.2
570,917 + GFF1715 0.28 -0.8
570,917 + GFF1715 0.28 -2.1
570,917 + GFF1715 0.28 +0.6
570,917 + GFF1715 0.28 -0.5
570,918 - GFF1715 0.28 -2.0
570,918 - GFF1715 0.28 -1.8
570,918 - GFF1715 0.28 -0.4
570,918 - GFF1715 0.28 -1.1
571,104 - GFF1715 0.39 -0.5
571,104 - GFF1715 0.39 -1.2
571,170 - GFF1715 0.44 -1.0
571,490 + GFF1715 0.63 -0.6
571,491 - GFF1715 0.63 -1.6
571,491 - GFF1715 0.63 -0.8
571,491 - GFF1715 0.63 -0.7
571,491 - GFF1715 0.63 -1.2
571,491 - GFF1715 0.63 -0.9
571,491 - GFF1715 0.63 -1.0
571,568 + GFF1715 0.68 -1.3
571,568 + GFF1715 0.68 -1.5
571,568 + GFF1715 0.68 -0.3
571,568 + GFF1715 0.68 -0.8
571,568 + GFF1715 0.68 -1.1
571,568 + GFF1715 0.68 +0.6
571,568 + GFF1715 0.68 -1.5
571,568 + GFF1715 0.68 -0.2
571,568 + GFF1715 0.68 -0.9
571,569 - GFF1715 0.68 -0.8
571,569 - GFF1715 0.68 +0.5
571,569 - GFF1715 0.68 -2.0
571,569 - GFF1715 0.68 -0.2
571,649 + GFF1715 0.73 -1.0
571,649 + GFF1715 0.73 -2.4
571,649 + GFF1715 0.73 -1.4
571,649 + GFF1715 0.73 -1.2
571,650 - GFF1715 0.73 +0.1
571,650 - GFF1715 0.73 -1.1
571,650 - GFF1715 0.73 -0.7
571,718 + GFF1715 0.77 -0.7
571,719 - GFF1715 0.77 +2.0
571,719 - GFF1715 0.77 -2.6
571,721 + GFF1715 0.78 +1.6
571,721 + GFF1715 0.78 +0.2
571,721 + GFF1715 0.78 -0.3
571,721 + GFF1715 0.78 -1.9
571,721 + GFF1715 0.78 -0.0
571,721 + GFF1715 0.78 -2.0
571,721 + GFF1715 0.78 +1.3
571,722 - GFF1715 0.78 -1.0
571,722 - GFF1715 0.78 -1.5
571,722 - GFF1715 0.78 -1.6
571,722 - GFF1715 0.78 -1.7
571,722 - GFF1715 0.78 -0.6
571,722 - GFF1715 0.78 +0.5
571,722 - GFF1715 0.78 -2.4
571,722 - GFF1715 0.78 -3.0
571,841 + GFF1715 0.85 -1.8
571,841 + GFF1715 0.85 -0.4
571,841 + GFF1715 0.85 -1.8
571,841 + GFF1715 0.85 -1.8
571,842 - GFF1715 0.85 -1.3
571,842 - GFF1715 0.85 +1.0
571,842 - GFF1715 0.85 -1.7
571,842 - GFF1715 0.85 -0.9
571,842 - GFF1715 0.85 -0.4
572,125 + -0.0
572,125 + -0.3
572,126 - +1.0
572,126 - +0.3
572,126 - -0.6
572,126 - -0.4
572,167 + -0.8
572,167 + +0.0
572,210 - -0.5
572,258 + +1.0
572,259 - -2.5
572,441 + GFF1716 0.19 -0.2
572,441 + GFF1716 0.19 -1.7
572,441 + GFF1716 0.19 +1.0
572,441 + GFF1716 0.19 -0.4
572,441 + GFF1716 0.19 +1.0
572,441 + GFF1716 0.19 -1.3
572,442 - GFF1716 0.20 -2.0
572,442 - GFF1716 0.20 -2.2
572,442 - GFF1716 0.20 -1.1
572,442 - GFF1716 0.20 -0.7
572,442 - GFF1716 0.20 +0.0
572,663 + GFF1716 0.42 -0.8
572,664 - GFF1716 0.42 -1.0
572,664 - GFF1716 0.42 -1.9
572,664 - GFF1716 0.42 -1.3
572,732 + GFF1716 0.49 -0.7
572,732 + GFF1716 0.49 -0.2
572,802 - GFF1716 0.55 -0.8
572,802 - GFF1716 0.55 -0.6
572,883 - GFF1716 0.64 +0.0

Or see this region's nucleotide sequence