Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1681 and GFF1682 are separated by 12 nucleotides GFF1682 and GFF1683 are separated by 206 nucleotides GFF1683 and GFF1684 are separated by 9 nucleotides GFF1684 and GFF1685 are separated by 140 nucleotides
GFF1681 - SSU ribosomal protein S9p (S16e), at 534,507 to 534,899
GFF1681
GFF1682 - LSU ribosomal protein L13p (L13Ae), at 534,912 to 535,343
GFF1682
GFF1683 - Protein involved in catabolism of external DNA, at 535,550 to 536,467
GFF1683
GFF1684 - probable transmembrane protein, at 536,477 to 537,136
GFF1684
GFF1685 - Phenylacetate-CoA oxygenase, PaaG subunit, at 537,277 to 538,290
GFF1685
Position (kb) 535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 535.414 kb on - strand at 535.472 kb on + strand at 535.472 kb on + strand at 535.472 kb on + strand at 535.472 kb on + strand at 535.473 kb on - strand at 535.538 kb on + strand at 535.559 kb on + strand at 535.559 kb on + strand at 535.691 kb on + strand, within GFF1683 at 535.710 kb on - strand, within GFF1683 at 535.710 kb on - strand, within GFF1683 at 535.710 kb on - strand, within GFF1683 at 535.817 kb on + strand, within GFF1683 at 535.817 kb on + strand, within GFF1683 at 535.818 kb on - strand, within GFF1683 at 535.818 kb on - strand, within GFF1683 at 535.818 kb on - strand, within GFF1683 at 535.818 kb on - strand, within GFF1683 at 535.865 kb on + strand, within GFF1683 at 535.865 kb on + strand, within GFF1683 at 535.866 kb on - strand, within GFF1683 at 536.105 kb on + strand, within GFF1683 at 536.105 kb on + strand, within GFF1683 at 536.105 kb on + strand, within GFF1683 at 536.106 kb on - strand, within GFF1683 at 536.145 kb on + strand, within GFF1683 at 536.146 kb on - strand, within GFF1683 at 536.180 kb on + strand, within GFF1683 at 536.180 kb on + strand, within GFF1683 at 536.180 kb on + strand, within GFF1683 at 536.180 kb on + strand, within GFF1683 at 536.180 kb on + strand, within GFF1683 at 536.180 kb on + strand, within GFF1683 at 536.180 kb on + strand, within GFF1683 at 536.180 kb on + strand, within GFF1683 at 536.180 kb on + strand, within GFF1683 at 536.180 kb on + strand, within GFF1683 at 536.180 kb on + strand, within GFF1683 at 536.181 kb on - strand, within GFF1683 at 536.181 kb on - strand, within GFF1683 at 536.181 kb on - strand, within GFF1683 at 536.181 kb on - strand, within GFF1683 at 536.181 kb on - strand, within GFF1683 at 536.181 kb on - strand, within GFF1683 at 536.181 kb on - strand, within GFF1683 at 536.181 kb on - strand, within GFF1683 at 536.181 kb on - strand, within GFF1683 at 536.248 kb on - strand, within GFF1683 at 536.508 kb on + strand at 536.508 kb on + strand at 536.508 kb on + strand at 536.509 kb on - strand at 536.517 kb on + strand at 536.517 kb on + strand at 536.517 kb on + strand at 536.517 kb on + strand at 536.518 kb on - strand at 536.518 kb on - strand at 536.518 kb on - strand at 536.518 kb on - strand at 536.562 kb on + strand, within GFF1684 at 536.562 kb on + strand, within GFF1684 at 536.563 kb on - strand, within GFF1684 at 536.563 kb on - strand, within GFF1684 at 536.676 kb on + strand, within GFF1684 at 536.676 kb on + strand, within GFF1684 at 536.676 kb on + strand, within GFF1684 at 536.676 kb on + strand, within GFF1684 at 536.676 kb on + strand, within GFF1684 at 536.677 kb on - strand, within GFF1684 at 536.677 kb on - strand, within GFF1684 at 536.677 kb on - strand, within GFF1684 at 536.677 kb on - strand, within GFF1684 at 536.677 kb on - strand, within GFF1684 at 536.677 kb on - strand, within GFF1684 at 536.677 kb on - strand, within GFF1684 at 536.736 kb on + strand, within GFF1684 at 536.736 kb on + strand, within GFF1684 at 536.736 kb on + strand, within GFF1684 at 536.736 kb on + strand, within GFF1684 at 536.736 kb on + strand, within GFF1684 at 536.736 kb on + strand, within GFF1684 at 536.736 kb on + strand, within GFF1684 at 536.736 kb on + strand, within GFF1684 at 536.736 kb on + strand, within GFF1684 at 536.736 kb on + strand, within GFF1684 at 536.737 kb on - strand, within GFF1684 at 536.737 kb on - strand, within GFF1684 at 536.737 kb on - strand, within GFF1684 at 536.737 kb on - strand, within GFF1684 at 536.737 kb on - strand, within GFF1684 at 537.148 kb on + strand at 537.173 kb on - strand at 537.182 kb on + strand at 537.182 kb on + strand at 537.182 kb on + strand at 537.182 kb on + strand at 537.183 kb on - strand at 537.183 kb on - strand at 537.183 kb on - strand at 537.183 kb on - strand at 537.237 kb on + strand at 537.237 kb on + strand at 537.238 kb on - strand at 537.238 kb on - strand at 537.238 kb on - strand at 537.238 kb on - strand at 537.238 kb on - strand at 537.239 kb on + strand at 537.239 kb on + strand at 537.239 kb on + strand at 537.239 kb on + strand at 537.239 kb on + strand at 537.239 kb on + strand at 537.240 kb on + strand at 537.240 kb on - strand at 537.240 kb on - strand at 537.240 kb on - strand at 537.240 kb on - strand at 537.240 kb on - strand at 537.280 kb on + strand at 537.280 kb on + strand at 537.280 kb on + strand at 537.280 kb on + strand at 537.280 kb on + strand at 537.280 kb on + strand at 537.280 kb on + strand at 537.280 kb on + strand at 537.280 kb on + strand at 537.280 kb on + strand at 537.281 kb on + strand at 537.281 kb on - strand at 537.281 kb on - strand at 537.281 kb on - strand at 537.281 kb on - strand at 537.281 kb on - strand at 537.281 kb on - strand at 537.281 kb on - strand at 537.430 kb on + strand, within GFF1685
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 535,414 - -0.6 535,472 + -1.1 535,472 + +1.2 535,472 + -0.7 535,472 + -0.2 535,473 - +0.4 535,538 + +0.6 535,559 + -0.4 535,559 + -0.4 535,691 + GFF1683 0.15 -2.6 535,710 - GFF1683 0.17 +0.1 535,710 - GFF1683 0.17 -0.9 535,710 - GFF1683 0.17 -0.7 535,817 + GFF1683 0.29 +1.7 535,817 + GFF1683 0.29 +0.3 535,818 - GFF1683 0.29 -0.6 535,818 - GFF1683 0.29 -0.5 535,818 - GFF1683 0.29 -0.3 535,818 - GFF1683 0.29 +0.2 535,865 + GFF1683 0.34 +2.0 535,865 + GFF1683 0.34 +1.0 535,866 - GFF1683 0.34 -0.7 536,105 + GFF1683 0.60 -0.3 536,105 + GFF1683 0.60 -0.2 536,105 + GFF1683 0.60 -0.3 536,106 - GFF1683 0.61 +0.4 536,145 + GFF1683 0.65 -0.5 536,146 - GFF1683 0.65 -0.6 536,180 + GFF1683 0.69 -0.1 536,180 + GFF1683 0.69 +0.4 536,180 + GFF1683 0.69 +0.1 536,180 + GFF1683 0.69 -0.1 536,180 + GFF1683 0.69 -0.6 536,180 + GFF1683 0.69 -2.3 536,180 + GFF1683 0.69 -0.4 536,180 + GFF1683 0.69 +0.2 536,180 + GFF1683 0.69 +0.2 536,180 + GFF1683 0.69 -0.2 536,180 + GFF1683 0.69 -1.6 536,181 - GFF1683 0.69 -2.9 536,181 - GFF1683 0.69 -0.0 536,181 - GFF1683 0.69 +0.2 536,181 - GFF1683 0.69 -0.5 536,181 - GFF1683 0.69 +0.9 536,181 - GFF1683 0.69 -0.3 536,181 - GFF1683 0.69 -0.6 536,181 - GFF1683 0.69 +0.4 536,181 - GFF1683 0.69 -0.4 536,248 - GFF1683 0.76 -0.3 536,508 + -0.7 536,508 + -0.2 536,508 + -0.3 536,509 - -0.0 536,517 + +0.1 536,517 + +0.3 536,517 + -0.4 536,517 + -0.0 536,518 - +0.3 536,518 - +0.4 536,518 - -0.5 536,518 - -0.6 536,562 + GFF1684 0.13 -0.2 536,562 + GFF1684 0.13 -1.1 536,563 - GFF1684 0.13 -0.8 536,563 - GFF1684 0.13 +1.0 536,676 + GFF1684 0.30 +0.5 536,676 + GFF1684 0.30 -0.8 536,676 + GFF1684 0.30 +0.4 536,676 + GFF1684 0.30 +0.9 536,676 + GFF1684 0.30 -0.2 536,677 - GFF1684 0.30 -0.9 536,677 - GFF1684 0.30 +1.0 536,677 - GFF1684 0.30 -0.0 536,677 - GFF1684 0.30 -0.6 536,677 - GFF1684 0.30 +0.2 536,677 - GFF1684 0.30 +0.2 536,677 - GFF1684 0.30 +0.7 536,736 + GFF1684 0.39 -0.1 536,736 + GFF1684 0.39 -0.4 536,736 + GFF1684 0.39 -0.3 536,736 + GFF1684 0.39 +1.0 536,736 + GFF1684 0.39 -0.3 536,736 + GFF1684 0.39 -0.4 536,736 + GFF1684 0.39 +0.3 536,736 + GFF1684 0.39 +0.3 536,736 + GFF1684 0.39 -0.1 536,736 + GFF1684 0.39 +0.0 536,737 - GFF1684 0.39 +1.0 536,737 - GFF1684 0.39 -0.3 536,737 - GFF1684 0.39 +0.2 536,737 - GFF1684 0.39 +0.0 536,737 - GFF1684 0.39 -0.4 537,148 + -0.2 537,173 - +0.7 537,182 + -0.3 537,182 + +0.2 537,182 + -1.6 537,182 + +0.3 537,183 - +0.1 537,183 - +0.2 537,183 - -0.4 537,183 - +0.3 537,237 + +0.3 537,237 + -1.0 537,238 - -0.4 537,238 - -0.2 537,238 - +1.0 537,238 - -0.6 537,238 - -0.4 537,239 + +0.6 537,239 + +0.7 537,239 + +0.1 537,239 + +2.2 537,239 + -0.4 537,239 + -0.0 537,240 + -0.1 537,240 - +0.7 537,240 - +0.6 537,240 - +0.6 537,240 - -0.4 537,240 - -0.8 537,280 + -2.2 537,280 + +0.2 537,280 + -0.2 537,280 + +0.1 537,280 + -1.4 537,280 + +1.2 537,280 + -0.0 537,280 + +0.4 537,280 + +0.4 537,280 + +0.4 537,281 + -0.1 537,281 - -0.6 537,281 - +0.6 537,281 - -1.0 537,281 - -0.2 537,281 - -0.0 537,281 - +1.9 537,281 - -0.0 537,430 + GFF1685 0.15 +0.7
Or see this region's nucleotide sequence