Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1624 and GFF1625 are separated by 67 nucleotides GFF1625 and GFF1626 overlap by 10 nucleotides GFF1626 and GFF1627 are separated by 27 nucleotides GFF1627 and GFF1628 are separated by 11 nucleotides GFF1628 and GFF1629 are separated by 14 nucleotides
GFF1624 - Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15), at 479,169 to 480,551
GFF1624
GFF1625 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 480,619 to 481,524
GFF1625
GFF1626 - Glucokinase (EC 2.7.1.2), at 481,515 to 482,528
GFF1626
GFF1627 - Thioredoxin, at 482,556 to 483,002
GFF1627
GFF1628 - hypothetical protein, at 483,014 to 483,196
GFF1628
GFF1629 - COG1565: Uncharacterized conserved protein, at 483,211 to 484,338
GFF1629
Position (kb) 481
482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 480.550 kb on - strand at 480.550 kb on - strand at 480.550 kb on - strand at 480.607 kb on + strand at 480.607 kb on + strand at 480.607 kb on + strand at 480.607 kb on + strand at 480.631 kb on + strand at 480.631 kb on + strand at 480.631 kb on + strand at 480.875 kb on + strand, within GFF1625 at 480.875 kb on + strand, within GFF1625 at 480.875 kb on + strand, within GFF1625 at 480.875 kb on + strand, within GFF1625 at 480.876 kb on - strand, within GFF1625 at 480.876 kb on - strand, within GFF1625 at 480.876 kb on - strand, within GFF1625 at 480.977 kb on - strand, within GFF1625 at 481.013 kb on + strand, within GFF1625 at 481.013 kb on + strand, within GFF1625 at 481.013 kb on + strand, within GFF1625 at 481.014 kb on - strand, within GFF1625 at 481.014 kb on - strand, within GFF1625 at 481.088 kb on + strand, within GFF1625 at 481.096 kb on + strand, within GFF1625 at 481.096 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.115 kb on - strand, within GFF1625 at 481.115 kb on - strand, within GFF1625 at 481.115 kb on - strand, within GFF1625 at 481.115 kb on - strand, within GFF1625 at 481.115 kb on - strand, within GFF1625 at 481.122 kb on + strand, within GFF1625 at 481.123 kb on - strand, within GFF1625 at 481.195 kb on + strand, within GFF1625 at 481.390 kb on + strand, within GFF1625 at 481.391 kb on - strand, within GFF1625 at 481.391 kb on - strand, within GFF1625 at 481.459 kb on + strand at 481.567 kb on - strand at 481.711 kb on + strand, within GFF1626 at 481.712 kb on - strand, within GFF1626 at 482.351 kb on - strand, within GFF1626 at 483.024 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 480,550 - +0.1 480,550 - +0.2 480,550 - +0.3 480,607 + +0.3 480,607 + -0.3 480,607 + +0.4 480,607 + +0.7 480,631 + +0.4 480,631 + +0.6 480,631 + -0.8 480,875 + GFF1625 0.28 +1.2 480,875 + GFF1625 0.28 -1.1 480,875 + GFF1625 0.28 +0.5 480,875 + GFF1625 0.28 +0.0 480,876 - GFF1625 0.28 -0.4 480,876 - GFF1625 0.28 +0.7 480,876 - GFF1625 0.28 +0.5 480,977 - GFF1625 0.40 +1.8 481,013 + GFF1625 0.43 +0.2 481,013 + GFF1625 0.43 -0.1 481,013 + GFF1625 0.43 +0.9 481,014 - GFF1625 0.44 -0.1 481,014 - GFF1625 0.44 -0.1 481,088 + GFF1625 0.52 -0.1 481,096 + GFF1625 0.53 -0.2 481,096 + GFF1625 0.53 -0.1 481,114 + GFF1625 0.55 +0.1 481,114 + GFF1625 0.55 +0.3 481,114 + GFF1625 0.55 +0.1 481,114 + GFF1625 0.55 +0.4 481,114 + GFF1625 0.55 -0.7 481,114 + GFF1625 0.55 -0.3 481,114 + GFF1625 0.55 -0.6 481,115 - GFF1625 0.55 +0.1 481,115 - GFF1625 0.55 -3.2 481,115 - GFF1625 0.55 +1.3 481,115 - GFF1625 0.55 +0.0 481,115 - GFF1625 0.55 -0.6 481,122 + GFF1625 0.56 -0.2 481,123 - GFF1625 0.56 -0.4 481,195 + GFF1625 0.64 +0.9 481,390 + GFF1625 0.85 -0.4 481,391 - GFF1625 0.85 +0.6 481,391 - GFF1625 0.85 +0.4 481,459 + -1.4 481,567 - -0.1 481,711 + GFF1626 0.19 -0.4 481,712 - GFF1626 0.19 +0.4 482,351 - GFF1626 0.82 +0.3 483,024 + -1.1
Or see this region's nucleotide sequence