Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1549 and GFF1550 are separated by 15 nucleotides GFF1550 and GFF1551 are separated by 141 nucleotides GFF1551 and GFF1552 are separated by 46 nucleotides GFF1552 and GFF1553 are separated by 73 nucleotides
GFF1549 - Transcriptional regulator, at 404,614 to 405,552
GFF1549
GFF1550 - hypothetical protein, at 405,568 to 406,287
GFF1550
GFF1551 - Acetolactate synthase large subunit (EC 2.2.1.6), at 406,429 to 407,991
GFF1551
GFF1552 - hypothetical protein, at 408,038 to 408,244
GFF1552
GFF1553 - LysR-family transcriptional regulator, at 408,318 to 409,199
GFF1553
Position (kb) 406
407
408 Strain fitness (log2 ratio) -1
0
1
2 at 405.873 kb on - strand, within GFF1550 at 405.900 kb on - strand, within GFF1550 at 406.452 kb on - strand at 406.452 kb on - strand at 406.452 kb on - strand at 406.600 kb on + strand, within GFF1551 at 406.601 kb on - strand, within GFF1551 at 406.601 kb on - strand, within GFF1551 at 406.601 kb on - strand, within GFF1551 at 407.137 kb on + strand, within GFF1551 at 407.138 kb on - strand, within GFF1551 at 407.138 kb on - strand, within GFF1551 at 407.612 kb on - strand, within GFF1551 at 407.696 kb on - strand, within GFF1551 at 407.696 kb on - strand, within GFF1551 at 407.696 kb on - strand, within GFF1551 at 407.696 kb on - strand, within GFF1551 at 407.696 kb on - strand, within GFF1551 at 408.282 kb on - strand at 408.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 405,873 - GFF1550 0.42 -0.8 405,900 - GFF1550 0.46 -1.7 406,452 - -0.3 406,452 - -0.7 406,452 - +0.2 406,600 + GFF1551 0.11 +0.4 406,601 - GFF1551 0.11 -0.0 406,601 - GFF1551 0.11 +0.2 406,601 - GFF1551 0.11 -0.4 407,137 + GFF1551 0.45 -0.0 407,138 - GFF1551 0.45 +0.3 407,138 - GFF1551 0.45 -0.1 407,612 - GFF1551 0.76 +0.1 407,696 - GFF1551 0.81 -0.3 407,696 - GFF1551 0.81 +1.8 407,696 - GFF1551 0.81 +1.2 407,696 - GFF1551 0.81 +0.5 407,696 - GFF1551 0.81 -0.4 408,282 - -1.1 408,282 - -0.4
Or see this region's nucleotide sequence