Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1486 and GFF1487 are separated by 97 nucleotides GFF1487 and GFF1488 are separated by 16 nucleotides GFF1488 and GFF1489 overlap by 4 nucleotides GFF1489 and GFF1490 overlap by 4 nucleotides
GFF1486 - hypothetical protein, at 334,204 to 335,289
GFF1486
GFF1487 - Universal stress family protein, at 335,387 to 335,833
GFF1487
GFF1488 - Two-component system response regulator, at 335,850 to 336,281
GFF1488
GFF1489 - Sensory box histidine kinase, at 336,278 to 338,929
GFF1489
GFF1490 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 338,926 to 339,906
GFF1490
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 335.700 kb on + strand, within GFF1487 at 335.700 kb on + strand, within GFF1487 at 335.700 kb on + strand, within GFF1487 at 335.701 kb on - strand, within GFF1487 at 335.854 kb on + strand at 335.854 kb on + strand at 335.882 kb on - strand at 335.882 kb on - strand at 335.882 kb on - strand at 335.942 kb on - strand, within GFF1488 at 335.942 kb on - strand, within GFF1488 at 335.962 kb on + strand, within GFF1488 at 336.003 kb on + strand, within GFF1488 at 336.003 kb on + strand, within GFF1488 at 336.003 kb on + strand, within GFF1488 at 336.298 kb on - strand at 336.400 kb on - strand at 336.450 kb on + strand at 336.450 kb on + strand at 336.450 kb on + strand at 336.451 kb on - strand at 336.757 kb on - strand, within GFF1489 at 336.876 kb on + strand, within GFF1489 at 336.876 kb on + strand, within GFF1489 at 336.924 kb on + strand, within GFF1489 at 336.925 kb on - strand, within GFF1489 at 337.066 kb on - strand, within GFF1489 at 337.066 kb on - strand, within GFF1489 at 337.242 kb on + strand, within GFF1489 at 337.242 kb on + strand, within GFF1489 at 337.243 kb on - strand, within GFF1489 at 337.296 kb on + strand, within GFF1489 at 337.297 kb on - strand, within GFF1489 at 337.338 kb on + strand, within GFF1489 at 337.338 kb on + strand, within GFF1489 at 337.338 kb on + strand, within GFF1489 at 337.339 kb on - strand, within GFF1489 at 337.339 kb on - strand, within GFF1489 at 337.551 kb on + strand, within GFF1489 at 337.552 kb on - strand, within GFF1489 at 337.752 kb on + strand, within GFF1489 at 337.959 kb on + strand, within GFF1489 at 338.016 kb on + strand, within GFF1489 at 338.016 kb on + strand, within GFF1489 at 338.017 kb on - strand, within GFF1489 at 338.083 kb on - strand, within GFF1489 at 338.083 kb on - strand, within GFF1489 at 338.659 kb on - strand, within GFF1489 at 338.659 kb on - strand, within GFF1489 at 338.679 kb on + strand at 338.680 kb on - strand at 339.104 kb on + strand, within GFF1490 at 339.134 kb on + strand, within GFF1490 at 339.371 kb on + strand, within GFF1490 at 339.371 kb on + strand, within GFF1490 at 339.372 kb on - strand, within GFF1490 at 339.372 kb on - strand, within GFF1490 at 339.791 kb on + strand, within GFF1490
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 335,700 + GFF1487 0.70 -0.0 335,700 + GFF1487 0.70 -0.1 335,700 + GFF1487 0.70 -0.4 335,701 - GFF1487 0.70 +0.4 335,854 + +1.2 335,854 + -0.8 335,882 - -2.7 335,882 - -0.3 335,882 - -0.7 335,942 - GFF1488 0.21 -1.4 335,942 - GFF1488 0.21 +0.4 335,962 + GFF1488 0.26 -2.5 336,003 + GFF1488 0.35 -0.7 336,003 + GFF1488 0.35 +0.9 336,003 + GFF1488 0.35 +0.9 336,298 - +1.2 336,400 - +0.4 336,450 + +0.3 336,450 + -0.3 336,450 + +0.1 336,451 - +0.1 336,757 - GFF1489 0.18 +0.0 336,876 + GFF1489 0.23 +1.2 336,876 + GFF1489 0.23 -0.3 336,924 + GFF1489 0.24 -0.7 336,925 - GFF1489 0.24 +0.1 337,066 - GFF1489 0.30 -0.2 337,066 - GFF1489 0.30 +0.7 337,242 + GFF1489 0.36 -0.3 337,242 + GFF1489 0.36 +1.6 337,243 - GFF1489 0.36 -0.3 337,296 + GFF1489 0.38 -0.3 337,297 - GFF1489 0.38 -0.7 337,338 + GFF1489 0.40 -0.2 337,338 + GFF1489 0.40 +0.3 337,338 + GFF1489 0.40 -1.6 337,339 - GFF1489 0.40 -0.4 337,339 - GFF1489 0.40 -0.1 337,551 + GFF1489 0.48 +1.3 337,552 - GFF1489 0.48 -0.0 337,752 + GFF1489 0.56 -0.2 337,959 + GFF1489 0.63 -1.1 338,016 + GFF1489 0.66 +0.0 338,016 + GFF1489 0.66 -2.8 338,017 - GFF1489 0.66 +1.3 338,083 - GFF1489 0.68 -0.3 338,083 - GFF1489 0.68 +0.0 338,659 - GFF1489 0.90 -3.5 338,659 - GFF1489 0.90 +0.9 338,679 + -0.5 338,680 - +0.9 339,104 + GFF1490 0.18 +0.1 339,134 + GFF1490 0.21 +2.5 339,371 + GFF1490 0.45 +0.4 339,371 + GFF1490 0.45 +0.9 339,372 - GFF1490 0.45 -0.7 339,372 - GFF1490 0.45 -0.3 339,791 + GFF1490 0.88 -1.1
Or see this region's nucleotide sequence