Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF125 and GFF126 are separated by 101 nucleotides GFF126 and GFF127 are separated by 13 nucleotides GFF127 and GFF128 are separated by 122 nucleotides
GFF125 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 138,272 to 139,966
GFF125
GFF126 - Hydratase/decarboxylase, at 140,068 to 140,868
GFF126
GFF127 - transcriptional regulator, MerR family, at 140,882 to 141,814
GFF127
GFF128 - Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8), at 141,937 to 144,084
GFF128
Position (kb) 140
141
142 Strain fitness (log2 ratio) -2
-1
0
1 at 139.923 kb on + strand at 139.984 kb on + strand at 139.984 kb on + strand at 139.985 kb on - strand at 139.985 kb on - strand at 139.985 kb on - strand at 140.003 kb on + strand at 140.003 kb on + strand at 140.004 kb on - strand at 140.004 kb on - strand at 140.027 kb on - strand at 140.988 kb on + strand, within GFF127 at 140.988 kb on + strand, within GFF127 at 141.057 kb on + strand, within GFF127 at 141.057 kb on + strand, within GFF127 at 141.057 kb on + strand, within GFF127 at 141.057 kb on + strand, within GFF127 at 141.058 kb on - strand, within GFF127 at 141.058 kb on - strand, within GFF127 at 141.058 kb on - strand, within GFF127 at 141.058 kb on - strand, within GFF127 at 141.303 kb on + strand, within GFF127 at 141.304 kb on - strand, within GFF127 at 141.304 kb on - strand, within GFF127 at 141.304 kb on - strand, within GFF127 at 141.676 kb on - strand, within GFF127 at 141.903 kb on + strand at 141.904 kb on - strand at 141.904 kb on - strand at 141.904 kb on - strand at 142.051 kb on + strand at 142.052 kb on - strand at 142.052 kb on - strand at 142.198 kb on + strand, within GFF128 at 142.198 kb on + strand, within GFF128 at 142.639 kb on + strand, within GFF128 at 142.640 kb on - strand, within GFF128 at 142.640 kb on - strand, within GFF128 at 142.747 kb on + strand, within GFF128 at 142.747 kb on + strand, within GFF128 at 142.748 kb on + strand, within GFF128
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 139,923 + +0.4 139,984 + -0.2 139,984 + -0.3 139,985 - +0.4 139,985 - -0.3 139,985 - -0.4 140,003 + -0.6 140,003 + -0.1 140,004 - +0.0 140,004 - -0.9 140,027 - -0.9 140,988 + GFF127 0.11 -0.0 140,988 + GFF127 0.11 +0.1 141,057 + GFF127 0.19 +0.1 141,057 + GFF127 0.19 -0.5 141,057 + GFF127 0.19 -0.5 141,057 + GFF127 0.19 -0.9 141,058 - GFF127 0.19 +0.0 141,058 - GFF127 0.19 +0.5 141,058 - GFF127 0.19 -0.3 141,058 - GFF127 0.19 -1.5 141,303 + GFF127 0.45 -1.0 141,304 - GFF127 0.45 +0.7 141,304 - GFF127 0.45 +0.7 141,304 - GFF127 0.45 +0.3 141,676 - GFF127 0.85 +0.5 141,903 + -0.8 141,904 - -0.5 141,904 - +0.3 141,904 - +1.7 142,051 + -0.1 142,052 - -0.2 142,052 - -0.7 142,198 + GFF128 0.12 -1.8 142,198 + GFF128 0.12 +0.1 142,639 + GFF128 0.33 -0.5 142,640 - GFF128 0.33 +0.2 142,640 - GFF128 0.33 +0.2 142,747 + GFF128 0.38 -0.2 142,747 + GFF128 0.38 -0.1 142,748 + GFF128 0.38 -0.8
Or see this region's nucleotide sequence