Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF114

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF112 and GFF113 are separated by 1 nucleotidesGFF113 and GFF114 overlap by 1 nucleotidesGFF114 and GFF115 are separated by 46 nucleotides GFF112 - Ku domain protein, at 121,637 to 122,470 GFF112 GFF113 - Membrane protein, putative, at 122,472 to 123,383 GFF113 GFF114 - COG0613, Predicted metal-dependent phosphoesterases (PHP family), at 123,383 to 124,240 GFF114 GFF115 - Phosphoenolpyruvate carboxylase (EC 4.1.1.31), at 124,287 to 127,127 GFF115 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1at 122.644 kb on + strand, within GFF113at 122.644 kb on + strand, within GFF113at 122.645 kb on - strand, within GFF113at 122.818 kb on + strand, within GFF113at 122.884 kb on + strand, within GFF113at 122.884 kb on + strand, within GFF113at 122.885 kb on - strand, within GFF113at 122.885 kb on - strand, within GFF113at 123.091 kb on + strand, within GFF113at 123.091 kb on + strand, within GFF113at 123.091 kb on + strand, within GFF113at 123.091 kb on + strand, within GFF113at 123.091 kb on + strand, within GFF113at 123.091 kb on + strand, within GFF113at 123.091 kb on + strand, within GFF113at 123.091 kb on + strand, within GFF113at 123.091 kb on + strand, within GFF113at 123.092 kb on - strand, within GFF113at 123.092 kb on - strand, within GFF113at 123.092 kb on - strand, within GFF113at 123.092 kb on - strand, within GFF113at 123.092 kb on - strand, within GFF113at 123.280 kb on + strand, within GFF113at 123.280 kb on + strand, within GFF113at 123.280 kb on + strand, within GFF113at 123.281 kb on - strand, within GFF113at 123.281 kb on - strand, within GFF113at 123.281 kb on - strand, within GFF113at 123.281 kb on - strand, within GFF113at 123.537 kb on + strand, within GFF114at 123.537 kb on + strand, within GFF114at 123.538 kb on - strand, within GFF114at 123.546 kb on + strand, within GFF114at 123.648 kb on + strand, within GFF114at 123.739 kb on - strand, within GFF114at 123.762 kb on + strand, within GFF114at 123.762 kb on + strand, within GFF114at 123.762 kb on + strand, within GFF114at 123.762 kb on + strand, within GFF114at 123.762 kb on + strand, within GFF114at 123.762 kb on + strand, within GFF114at 123.763 kb on - strand, within GFF114at 123.763 kb on - strand, within GFF114at 123.763 kb on - strand, within GFF114at 123.813 kb on + strand, within GFF114at 123.814 kb on - strand, within GFF114at 123.814 kb on - strand, within GFF114at 123.858 kb on + strand, within GFF114at 123.858 kb on + strand, within GFF114at 123.858 kb on + strand, within GFF114at 123.859 kb on - strand, within GFF114at 123.859 kb on - strand, within GFF114at 123.859 kb on - strand, within GFF114at 123.876 kb on + strand, within GFF114at 123.876 kb on + strand, within GFF114at 123.876 kb on + strand, within GFF114at 123.877 kb on - strand, within GFF114at 123.877 kb on - strand, within GFF114at 124.056 kb on + strand, within GFF114at 124.251 kb on + strandat 124.252 kb on - strandat 124.432 kb on + strandat 124.433 kb on - strandat 124.594 kb on + strand, within GFF115at 124.595 kb on - strand, within GFF115at 124.765 kb on + strand, within GFF115at 124.919 kb on - strand, within GFF115at 124.919 kb on - strand, within GFF115at 124.919 kb on - strand, within GFF115at 124.942 kb on + strand, within GFF115at 124.943 kb on - strand, within GFF115at 124.943 kb on - strand, within GFF115at 125.101 kb on + strand, within GFF115at 125.101 kb on + strand, within GFF115at 125.101 kb on + strand, within GFF115at 125.185 kb on + strand, within GFF115at 125.185 kb on + strand, within GFF115at 125.185 kb on + strand, within GFF115at 125.185 kb on + strand, within GFF115at 125.186 kb on - strand, within GFF115

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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122,644 + GFF113 0.19 -0.7
122,644 + GFF113 0.19 -0.7
122,645 - GFF113 0.19 +0.0
122,818 + GFF113 0.38 -0.0
122,884 + GFF113 0.45 -0.1
122,884 + GFF113 0.45 -0.1
122,885 - GFF113 0.45 +0.1
122,885 - GFF113 0.45 +0.2
123,091 + GFF113 0.68 +0.4
123,091 + GFF113 0.68 +0.6
123,091 + GFF113 0.68 +0.0
123,091 + GFF113 0.68 +0.1
123,091 + GFF113 0.68 -0.1
123,091 + GFF113 0.68 -0.4
123,091 + GFF113 0.68 +0.9
123,091 + GFF113 0.68 -1.0
123,091 + GFF113 0.68 +0.1
123,092 - GFF113 0.68 +0.3
123,092 - GFF113 0.68 -0.1
123,092 - GFF113 0.68 +0.1
123,092 - GFF113 0.68 +0.8
123,092 - GFF113 0.68 -0.1
123,280 + GFF113 0.89 +0.1
123,280 + GFF113 0.89 +0.7
123,280 + GFF113 0.89 +0.3
123,281 - GFF113 0.89 -0.6
123,281 - GFF113 0.89 +0.0
123,281 - GFF113 0.89 +0.2
123,281 - GFF113 0.89 -0.1
123,537 + GFF114 0.18 -1.1
123,537 + GFF114 0.18 +0.6
123,538 - GFF114 0.18 -1.1
123,546 + GFF114 0.19 -1.7
123,648 + GFF114 0.31 -0.7
123,739 - GFF114 0.41 -0.2
123,762 + GFF114 0.44 +0.3
123,762 + GFF114 0.44 -2.1
123,762 + GFF114 0.44 -1.1
123,762 + GFF114 0.44 -0.3
123,762 + GFF114 0.44 -0.8
123,762 + GFF114 0.44 -0.6
123,763 - GFF114 0.44 -1.4
123,763 - GFF114 0.44 -0.1
123,763 - GFF114 0.44 -0.5
123,813 + GFF114 0.50 +0.6
123,814 - GFF114 0.50 -0.5
123,814 - GFF114 0.50 -1.0
123,858 + GFF114 0.55 -2.1
123,858 + GFF114 0.55 -1.8
123,858 + GFF114 0.55 +0.4
123,859 - GFF114 0.55 -1.4
123,859 - GFF114 0.55 -1.5
123,859 - GFF114 0.55 +0.8
123,876 + GFF114 0.57 -0.7
123,876 + GFF114 0.57 -1.4
123,876 + GFF114 0.57 -0.8
123,877 - GFF114 0.58 -2.0
123,877 - GFF114 0.58 +0.6
124,056 + GFF114 0.78 -1.7
124,251 + -0.9
124,252 - -1.1
124,432 + -0.4
124,433 - -0.2
124,594 + GFF115 0.11 -0.2
124,595 - GFF115 0.11 -1.1
124,765 + GFF115 0.17 +0.1
124,919 - GFF115 0.22 +0.9
124,919 - GFF115 0.22 -0.1
124,919 - GFF115 0.22 +0.6
124,942 + GFF115 0.23 -0.2
124,943 - GFF115 0.23 -1.0
124,943 - GFF115 0.23 -0.2
125,101 + GFF115 0.29 -0.8
125,101 + GFF115 0.29 -1.3
125,101 + GFF115 0.29 +0.7
125,185 + GFF115 0.32 +0.3
125,185 + GFF115 0.32 -1.1
125,185 + GFF115 0.32 +0.3
125,185 + GFF115 0.32 +1.2
125,186 - GFF115 0.32 +0.9

Or see this region's nucleotide sequence