Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF981 and GFF982 are separated by 18 nucleotides GFF982 and GFF983 are separated by 173 nucleotides GFF983 and GFF984 are separated by 90 nucleotides GFF984 and GFF985 overlap by 15 nucleotides
GFF981 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 720,044 to 722,041
GFF981
GFF982 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 722,060 to 723,049
GFF982
GFF983 - hypothetical protein, at 723,223 to 723,336
GFF983
GFF984 - hypothetical protein, at 723,427 to 723,681
GFF984
GFF985 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 723,667 to 725,262
GFF985
Position (kb) 722
723
724 Strain fitness (log2 ratio) -1
0
1
2 at 722.075 kb on - strand at 722.075 kb on - strand at 722.135 kb on + strand at 722.376 kb on - strand, within GFF982 at 722.459 kb on + strand, within GFF982 at 722.493 kb on - strand, within GFF982 at 722.748 kb on - strand, within GFF982 at 723.322 kb on - strand, within GFF983 at 723.322 kb on - strand, within GFF983 at 723.326 kb on - strand at 723.373 kb on + strand at 723.374 kb on - strand at 723.374 kb on - strand at 723.374 kb on - strand at 723.387 kb on - strand at 723.501 kb on + strand, within GFF984 at 723.910 kb on + strand, within GFF985 at 723.910 kb on + strand, within GFF985 at 723.910 kb on + strand, within GFF985 at 724.043 kb on + strand, within GFF985 at 724.043 kb on + strand, within GFF985 at 724.043 kb on + strand, within GFF985 at 724.044 kb on - strand, within GFF985
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 722,075 - -0.4 722,075 - -0.1 722,135 + +0.4 722,376 - GFF982 0.32 +0.9 722,459 + GFF982 0.40 +0.0 722,493 - GFF982 0.44 +0.3 722,748 - GFF982 0.69 -0.1 723,322 - GFF983 0.87 +0.0 723,322 - GFF983 0.87 -0.5 723,326 - +0.5 723,373 + +0.1 723,374 - -0.1 723,374 - +2.2 723,374 - -0.0 723,387 - +0.5 723,501 + GFF984 0.29 -0.7 723,910 + GFF985 0.15 -0.7 723,910 + GFF985 0.15 -0.5 723,910 + GFF985 0.15 -0.1 724,043 + GFF985 0.24 -0.4 724,043 + GFF985 0.24 +0.0 724,043 + GFF985 0.24 -0.5 724,044 - GFF985 0.24 -1.6
Or see this region's nucleotide sequence