Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF942 and GFF943 overlap by 4 nucleotides GFF943 and GFF944 are separated by 9 nucleotides GFF944 and GFF945 are separated by 10 nucleotides GFF945 and GFF946 are separated by 2 nucleotides
GFF942 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 675,842 to 676,720
GFF942
GFF943 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 676,717 to 677,580
GFF943
GFF944 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 677,590 to 679,188
GFF944
GFF945 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 679,199 to 679,699
GFF945
GFF946 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 679,702 to 681,171
GFF946
Position (kb) 677
678
679
680 Strain fitness (log2 ratio) -2
-1
0
1
2 at 676.926 kb on - strand, within GFF943 at 677.153 kb on + strand, within GFF943 at 677.153 kb on + strand, within GFF943 at 677.154 kb on - strand, within GFF943 at 677.208 kb on - strand, within GFF943 at 677.386 kb on + strand, within GFF943 at 677.387 kb on - strand, within GFF943 at 677.723 kb on + strand at 677.724 kb on - strand at 677.936 kb on + strand, within GFF944 at 678.062 kb on + strand, within GFF944 at 678.096 kb on + strand, within GFF944 at 678.201 kb on - strand, within GFF944 at 678.207 kb on - strand, within GFF944 at 678.242 kb on + strand, within GFF944 at 678.347 kb on + strand, within GFF944 at 678.348 kb on - strand, within GFF944 at 678.350 kb on + strand, within GFF944 at 678.351 kb on - strand, within GFF944 at 678.488 kb on - strand, within GFF944 at 678.597 kb on - strand, within GFF944 at 678.617 kb on + strand, within GFF944 at 678.618 kb on - strand, within GFF944 at 678.720 kb on - strand, within GFF944 at 678.998 kb on - strand, within GFF944 at 678.998 kb on - strand, within GFF944 at 678.998 kb on - strand, within GFF944 at 678.998 kb on - strand, within GFF944 at 679.260 kb on + strand, within GFF945 at 679.261 kb on - strand, within GFF945 at 679.653 kb on - strand at 679.653 kb on - strand at 679.654 kb on - strand at 679.687 kb on - strand at 679.795 kb on + strand at 679.795 kb on + strand at 680.007 kb on + strand, within GFF946 at 680.156 kb on + strand, within GFF946
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 676,926 - GFF943 0.24 +0.5 677,153 + GFF943 0.50 +0.1 677,153 + GFF943 0.50 -0.9 677,154 - GFF943 0.51 -0.7 677,208 - GFF943 0.57 +0.9 677,386 + GFF943 0.77 -0.3 677,387 - GFF943 0.78 +0.9 677,723 + +0.2 677,724 - +2.1 677,936 + GFF944 0.22 +0.1 678,062 + GFF944 0.30 -0.1 678,096 + GFF944 0.32 +0.1 678,201 - GFF944 0.38 +2.2 678,207 - GFF944 0.39 +0.1 678,242 + GFF944 0.41 -0.5 678,347 + GFF944 0.47 -0.1 678,348 - GFF944 0.47 +1.1 678,350 + GFF944 0.48 +0.3 678,351 - GFF944 0.48 -1.6 678,488 - GFF944 0.56 +0.4 678,597 - GFF944 0.63 -0.2 678,617 + GFF944 0.64 -0.3 678,618 - GFF944 0.64 -0.1 678,720 - GFF944 0.71 +0.3 678,998 - GFF944 0.88 +0.3 678,998 - GFF944 0.88 -0.2 678,998 - GFF944 0.88 +0.4 678,998 - GFF944 0.88 -0.2 679,260 + GFF945 0.12 -0.2 679,261 - GFF945 0.12 -0.4 679,653 - +0.2 679,653 - -0.1 679,654 - -0.4 679,687 - -0.6 679,795 + +1.5 679,795 + -1.9 680,007 + GFF946 0.21 +1.7 680,156 + GFF946 0.31 -1.1
Or see this region's nucleotide sequence