Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF925 and GFF926 are separated by 17 nucleotides GFF926 and GFF927 are separated by 10 nucleotides GFF927 and GFF928 are separated by 33 nucleotides GFF928 and GFF929 are separated by 57 nucleotides
GFF925 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 657,837 to 658,730
GFF925
GFF926 - MaoC family protein, at 658,748 to 659,164
GFF926
GFF927 - Acyl dehydratase, at 659,175 to 659,618
GFF927
GFF928 - Acetyl-CoA acetyltransferase, at 659,652 to 660,836
GFF928
GFF929 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 660,894 to 661,139
GFF929
Position (kb) 659
660
661 Strain fitness (log2 ratio) -1
0
1
2 at 658.920 kb on + strand, within GFF926 at 659.169 kb on - strand at 659.287 kb on + strand, within GFF927 at 659.347 kb on + strand, within GFF927 at 659.509 kb on + strand, within GFF927 at 659.510 kb on - strand, within GFF927 at 659.777 kb on - strand, within GFF928 at 659.860 kb on + strand, within GFF928 at 659.927 kb on - strand, within GFF928 at 660.352 kb on + strand, within GFF928 at 660.353 kb on - strand, within GFF928 at 660.353 kb on - strand, within GFF928 at 660.395 kb on + strand, within GFF928 at 660.673 kb on + strand, within GFF928 at 660.674 kb on - strand, within GFF928 at 660.680 kb on - strand, within GFF928 at 660.680 kb on - strand, within GFF928 at 660.688 kb on + strand, within GFF928 at 660.688 kb on + strand, within GFF928 at 660.689 kb on - strand, within GFF928 at 660.710 kb on - strand, within GFF928 at 660.843 kb on - strand at 660.920 kb on - strand, within GFF929 at 661.238 kb on + strand at 661.239 kb on - strand at 661.326 kb on - strand at 661.329 kb on - strand at 661.727 kb on - strand at 661.727 kb on - strand at 661.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 658,920 + GFF926 0.41 -0.8 659,169 - -0.5 659,287 + GFF927 0.25 +0.4 659,347 + GFF927 0.39 +0.6 659,509 + GFF927 0.75 +0.3 659,510 - GFF927 0.75 +0.0 659,777 - GFF928 0.11 +0.3 659,860 + GFF928 0.18 -0.0 659,927 - GFF928 0.23 +0.1 660,352 + GFF928 0.59 +0.7 660,353 - GFF928 0.59 -0.1 660,353 - GFF928 0.59 +0.3 660,395 + GFF928 0.63 +0.7 660,673 + GFF928 0.86 -0.1 660,674 - GFF928 0.86 +0.4 660,680 - GFF928 0.87 +1.4 660,680 - GFF928 0.87 -0.7 660,688 + GFF928 0.87 +1.9 660,688 + GFF928 0.87 -0.5 660,689 - GFF928 0.88 -1.2 660,710 - GFF928 0.89 +1.2 660,843 - -0.1 660,920 - GFF929 0.11 -0.1 661,238 + -0.3 661,239 - -1.4 661,326 - +0.1 661,329 - -0.8 661,727 - +0.3 661,727 - -0.1 661,807 - -0.3
Or see this region's nucleotide sequence