Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF913 and GFF914 are separated by 27 nucleotides GFF914 and GFF915 overlap by 1 nucleotides GFF915 and GFF916 are separated by 93 nucleotides
GFF913 - Immune-responsive protein 1, at 644,593 to 646,017
GFF913
GFF914 - Carbonic anhydrase (EC 4.2.1.1), at 646,045 to 646,725
GFF914
GFF915 - Enoyl-CoA hydratase (EC 4.2.1.17), at 646,725 to 647,513
GFF915
GFF916 - Beta-lactamase-like, at 647,607 to 648,527
GFF916
Position (kb) 646
647
648 Strain fitness (log2 ratio) -1
0
1 at 646.088 kb on + strand at 646.089 kb on - strand at 646.161 kb on - strand, within GFF914 at 646.382 kb on - strand, within GFF914 at 646.458 kb on - strand, within GFF914 at 646.595 kb on + strand, within GFF914 at 646.595 kb on + strand, within GFF914 at 646.596 kb on - strand, within GFF914 at 646.631 kb on + strand, within GFF914 at 646.811 kb on - strand, within GFF915 at 646.969 kb on + strand, within GFF915 at 646.969 kb on + strand, within GFF915 at 647.489 kb on - strand at 647.528 kb on + strand at 647.617 kb on + strand at 647.618 kb on - strand at 647.734 kb on + strand, within GFF916 at 647.734 kb on + strand, within GFF916 at 647.879 kb on - strand, within GFF916 at 648.211 kb on + strand, within GFF916 at 648.211 kb on + strand, within GFF916 at 648.211 kb on + strand, within GFF916 at 648.212 kb on - strand, within GFF916 at 648.212 kb on - strand, within GFF916 at 648.286 kb on + strand, within GFF916 at 648.287 kb on - strand, within GFF916 at 648.338 kb on + strand, within GFF916 at 648.338 kb on + strand, within GFF916 at 648.415 kb on + strand, within GFF916 at 648.416 kb on - strand, within GFF916 at 648.416 kb on - strand, within GFF916 at 648.501 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 646,088 + -0.2 646,089 - -0.5 646,161 - GFF914 0.17 +1.3 646,382 - GFF914 0.49 -1.4 646,458 - GFF914 0.61 -0.1 646,595 + GFF914 0.81 -0.5 646,595 + GFF914 0.81 -0.5 646,596 - GFF914 0.81 +0.1 646,631 + GFF914 0.86 +0.3 646,811 - GFF915 0.11 +0.9 646,969 + GFF915 0.31 -0.9 646,969 + GFF915 0.31 -0.2 647,489 - +0.1 647,528 + -0.2 647,617 + -0.5 647,618 - +0.3 647,734 + GFF916 0.14 +0.4 647,734 + GFF916 0.14 +0.4 647,879 - GFF916 0.30 +0.2 648,211 + GFF916 0.66 -1.1 648,211 + GFF916 0.66 -0.1 648,211 + GFF916 0.66 -0.7 648,212 - GFF916 0.66 -0.2 648,212 - GFF916 0.66 +0.0 648,286 + GFF916 0.74 -0.2 648,287 - GFF916 0.74 +0.3 648,338 + GFF916 0.79 -0.0 648,338 + GFF916 0.79 -0.0 648,415 + GFF916 0.88 -0.0 648,416 - GFF916 0.88 -0.5 648,416 - GFF916 0.88 +0.3 648,501 - -0.4
Or see this region's nucleotide sequence