Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF868 and GFF869 are separated by 313 nucleotides GFF869 and GFF870 overlap by 17 nucleotides GFF870 and GFF871 overlap by 29 nucleotides
GFF868 - Metallo-beta-lactamase family protein, at 589,205 to 590,569
GFF868
GFF869 - carbon monoxide dehydrogenase E protein, at 590,883 to 592,337
GFF869
GFF870 - carbon monoxide dehydrogenase D protein, at 592,321 to 593,289
GFF870
GFF871 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 593,261 to 594,421
GFF871
Position (kb) 590
591
592
593 Strain fitness (log2 ratio) -1
0
1 at 589.924 kb on - strand, within GFF868 at 589.950 kb on + strand, within GFF868 at 589.950 kb on + strand, within GFF868 at 589.950 kb on + strand, within GFF868 at 589.951 kb on - strand, within GFF868 at 589.951 kb on - strand, within GFF868 at 590.185 kb on + strand, within GFF868 at 590.485 kb on - strand at 590.647 kb on + strand at 590.647 kb on + strand at 590.647 kb on + strand at 590.648 kb on - strand at 590.695 kb on - strand at 591.061 kb on + strand, within GFF869 at 591.062 kb on - strand, within GFF869 at 591.191 kb on - strand, within GFF869 at 591.361 kb on + strand, within GFF869 at 591.447 kb on + strand, within GFF869 at 591.447 kb on + strand, within GFF869 at 591.457 kb on + strand, within GFF869 at 591.826 kb on + strand, within GFF869 at 591.827 kb on - strand, within GFF869 at 591.827 kb on - strand, within GFF869 at 592.160 kb on - strand, within GFF869 at 592.729 kb on + strand, within GFF870 at 592.729 kb on + strand, within GFF870 at 592.730 kb on - strand, within GFF870 at 593.005 kb on - strand, within GFF870 at 593.005 kb on - strand, within GFF870 at 593.006 kb on + strand, within GFF870 at 593.007 kb on - strand, within GFF870 at 593.007 kb on - strand, within GFF870 at 593.025 kb on - strand, within GFF870 at 593.036 kb on + strand, within GFF870 at 593.036 kb on + strand, within GFF870 at 593.037 kb on - strand, within GFF870 at 593.186 kb on + strand, within GFF870 at 593.187 kb on - strand, within GFF870 at 593.219 kb on + strand at 593.278 kb on + strand at 593.278 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 589,924 - GFF868 0.53 +0.4 589,950 + GFF868 0.55 -0.3 589,950 + GFF868 0.55 +0.7 589,950 + GFF868 0.55 -0.2 589,951 - GFF868 0.55 +0.5 589,951 - GFF868 0.55 -0.3 590,185 + GFF868 0.72 +0.3 590,485 - +0.9 590,647 + +0.3 590,647 + -0.4 590,647 + +0.8 590,648 - +0.1 590,695 - -0.8 591,061 + GFF869 0.12 +0.0 591,062 - GFF869 0.12 +0.5 591,191 - GFF869 0.21 -0.1 591,361 + GFF869 0.33 -0.5 591,447 + GFF869 0.39 +0.0 591,447 + GFF869 0.39 +0.5 591,457 + GFF869 0.39 -0.2 591,826 + GFF869 0.65 +1.1 591,827 - GFF869 0.65 +0.5 591,827 - GFF869 0.65 +0.1 592,160 - GFF869 0.88 +0.2 592,729 + GFF870 0.42 +1.3 592,729 + GFF870 0.42 +1.3 592,730 - GFF870 0.42 +0.2 593,005 - GFF870 0.71 +0.7 593,005 - GFF870 0.71 -0.7 593,006 + GFF870 0.71 -0.2 593,007 - GFF870 0.71 -0.4 593,007 - GFF870 0.71 -1.1 593,025 - GFF870 0.73 +0.9 593,036 + GFF870 0.74 +0.1 593,036 + GFF870 0.74 +1.3 593,037 - GFF870 0.74 -0.7 593,186 + GFF870 0.89 +0.1 593,187 - GFF870 0.89 +0.2 593,219 + +0.6 593,278 + -0.4 593,278 + +0.2
Or see this region's nucleotide sequence