Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF786 and GFF787 are separated by 13 nucleotides GFF787 and GFF788 are separated by 50 nucleotides GFF788 and GFF789 are separated by 48 nucleotides GFF789 and GFF790 are separated by 64 nucleotides
GFF786 - probable polyketide cyclase, at 481,897 to 482,895
GFF786
GFF787 - hypothetical protein AF1210, at 482,909 to 483,844
GFF787
GFF788 - Tricarboxylate transport protein TctC, at 483,895 to 484,872
GFF788
GFF789 - hypothetical protein, at 484,921 to 485,799
GFF789
GFF790 - Probable lipoprotein, at 485,864 to 486,358
GFF790
Position (kb) 483
484
485 Strain fitness (log2 ratio) -2
-1
0
1
2 at 483.377 kb on + strand, within GFF787 at 483.377 kb on + strand, within GFF787 at 483.377 kb on + strand, within GFF787 at 483.378 kb on - strand, within GFF787 at 483.378 kb on - strand, within GFF787 at 483.378 kb on - strand, within GFF787 at 483.378 kb on - strand, within GFF787 at 483.446 kb on + strand, within GFF787 at 483.593 kb on + strand, within GFF787 at 483.594 kb on - strand, within GFF787 at 483.594 kb on - strand, within GFF787 at 483.596 kb on - strand, within GFF787 at 483.597 kb on - strand, within GFF787 at 484.168 kb on + strand, within GFF788 at 484.171 kb on - strand, within GFF788 at 484.171 kb on - strand, within GFF788 at 484.219 kb on + strand, within GFF788 at 484.219 kb on + strand, within GFF788 at 484.372 kb on + strand, within GFF788 at 484.372 kb on + strand, within GFF788 at 484.459 kb on + strand, within GFF788 at 484.460 kb on - strand, within GFF788 at 484.508 kb on - strand, within GFF788 at 484.508 kb on - strand, within GFF788 at 484.508 kb on - strand, within GFF788 at 484.508 kb on - strand, within GFF788 at 484.645 kb on + strand, within GFF788 at 484.645 kb on + strand, within GFF788 at 484.645 kb on + strand, within GFF788 at 484.645 kb on - strand, within GFF788 at 484.646 kb on - strand, within GFF788 at 484.663 kb on + strand, within GFF788 at 484.663 kb on + strand, within GFF788 at 484.663 kb on + strand, within GFF788 at 484.663 kb on + strand, within GFF788 at 484.664 kb on - strand, within GFF788 at 484.664 kb on - strand, within GFF788 at 484.664 kb on - strand, within GFF788 at 484.768 kb on + strand, within GFF788 at 484.831 kb on + strand at 485.521 kb on + strand, within GFF789 at 485.522 kb on - strand, within GFF789 at 485.683 kb on + strand, within GFF789
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 483,377 + GFF787 0.50 -0.5 483,377 + GFF787 0.50 -0.8 483,377 + GFF787 0.50 -0.6 483,378 - GFF787 0.50 -0.2 483,378 - GFF787 0.50 +0.3 483,378 - GFF787 0.50 +0.4 483,378 - GFF787 0.50 -0.0 483,446 + GFF787 0.57 -0.6 483,593 + GFF787 0.73 +0.0 483,594 - GFF787 0.73 +0.4 483,594 - GFF787 0.73 -1.4 483,596 - GFF787 0.73 -0.4 483,597 - GFF787 0.74 -0.0 484,168 + GFF788 0.28 -0.6 484,171 - GFF788 0.28 +0.1 484,171 - GFF788 0.28 +0.5 484,219 + GFF788 0.33 -0.1 484,219 + GFF788 0.33 +0.2 484,372 + GFF788 0.49 +0.1 484,372 + GFF788 0.49 -0.9 484,459 + GFF788 0.58 +0.1 484,460 - GFF788 0.58 +0.4 484,508 - GFF788 0.63 -0.1 484,508 - GFF788 0.63 +0.5 484,508 - GFF788 0.63 +0.5 484,508 - GFF788 0.63 -0.0 484,645 + GFF788 0.77 -0.9 484,645 + GFF788 0.77 -1.8 484,645 + GFF788 0.77 +1.4 484,645 - GFF788 0.77 +0.6 484,646 - GFF788 0.77 -0.1 484,663 + GFF788 0.79 +1.4 484,663 + GFF788 0.79 +0.5 484,663 + GFF788 0.79 -0.3 484,663 + GFF788 0.79 +0.4 484,664 - GFF788 0.79 -0.6 484,664 - GFF788 0.79 -0.1 484,664 - GFF788 0.79 -0.4 484,768 + GFF788 0.89 +0.8 484,831 + -0.4 485,521 + GFF789 0.68 +0.4 485,522 - GFF789 0.68 -0.1 485,683 + GFF789 0.87 +1.8
Or see this region's nucleotide sequence