Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5851 and GFF5852 are separated by 122 nucleotides
GFF5851 - Alcohol dehydrogenase (EC 1.1.1.1), at 54,261 to 54,797
GFF5851
GFF5852 - Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), at 54,920 to 55,882
GFF5852
Position (kb) 54
55 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 53.276 kb on + strand at 53.449 kb on - strand at 53.449 kb on - strand at 53.468 kb on + strand at 53.469 kb on - strand at 53.497 kb on + strand at 53.497 kb on + strand at 53.497 kb on + strand at 53.498 kb on - strand at 53.498 kb on - strand at 53.511 kb on + strand at 53.511 kb on + strand at 53.512 kb on - strand at 53.512 kb on - strand at 53.513 kb on - strand at 53.706 kb on + strand at 53.706 kb on + strand at 53.707 kb on - strand at 53.707 kb on - strand at 53.707 kb on - strand at 53.707 kb on - strand at 53.723 kb on + strand at 53.723 kb on + strand at 53.724 kb on - strand at 53.738 kb on + strand at 53.764 kb on + strand at 53.764 kb on + strand at 53.765 kb on - strand at 53.765 kb on - strand at 53.787 kb on + strand at 53.787 kb on + strand at 53.788 kb on - strand at 53.788 kb on - strand at 53.788 kb on - strand at 53.794 kb on + strand at 53.794 kb on + strand at 53.795 kb on - strand at 53.795 kb on - strand at 53.795 kb on - strand at 53.795 kb on - strand at 53.795 kb on - strand at 53.795 kb on - strand at 53.795 kb on - strand at 53.840 kb on + strand at 53.844 kb on + strand at 53.844 kb on + strand at 53.844 kb on + strand at 53.844 kb on + strand at 53.844 kb on + strand at 53.844 kb on + strand at 53.844 kb on + strand at 53.844 kb on + strand at 53.845 kb on - strand at 53.845 kb on - strand at 53.845 kb on - strand at 53.845 kb on - strand at 53.845 kb on - strand at 53.845 kb on - strand at 53.845 kb on - strand at 53.845 kb on - strand at 53.845 kb on - strand at 53.845 kb on - strand at 53.845 kb on - strand at 53.845 kb on - strand at 53.845 kb on - strand at 53.845 kb on - strand at 53.866 kb on + strand at 53.866 kb on + strand at 53.866 kb on + strand at 53.867 kb on - strand at 53.867 kb on - strand at 53.867 kb on - strand at 53.867 kb on - strand at 53.867 kb on - strand at 53.867 kb on - strand at 53.867 kb on - strand at 53.867 kb on - strand at 53.984 kb on + strand at 53.984 kb on + strand at 53.985 kb on - strand at 53.985 kb on - strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.020 kb on - strand at 54.087 kb on - strand at 54.087 kb on - strand at 54.099 kb on + strand at 54.152 kb on - strand at 54.193 kb on + strand at 54.209 kb on - strand at 54.463 kb on - strand, within GFF5851 at 54.463 kb on - strand, within GFF5851 at 54.532 kb on + strand, within GFF5851 at 54.533 kb on - strand, within GFF5851 at 54.592 kb on + strand, within GFF5851 at 54.646 kb on + strand, within GFF5851 at 54.646 kb on + strand, within GFF5851 at 54.647 kb on - strand, within GFF5851 at 54.647 kb on - strand, within GFF5851 at 54.672 kb on + strand, within GFF5851 at 54.672 kb on + strand, within GFF5851 at 54.673 kb on - strand, within GFF5851 at 54.673 kb on - strand, within GFF5851 at 54.674 kb on + strand, within GFF5851 at 54.675 kb on - strand, within GFF5851 at 54.675 kb on - strand, within GFF5851 at 54.690 kb on - strand, within GFF5851 at 54.795 kb on + strand at 54.795 kb on + strand at 54.796 kb on - strand at 54.815 kb on + strand at 54.847 kb on + strand at 54.847 kb on + strand at 54.847 kb on + strand at 54.848 kb on - strand at 54.848 kb on - strand at 54.848 kb on - strand at 54.848 kb on - strand at 54.865 kb on + strand at 54.865 kb on + strand at 54.866 kb on - strand at 55.009 kb on + strand at 55.009 kb on + strand at 55.009 kb on + strand at 55.009 kb on + strand at 55.009 kb on + strand at 55.010 kb on - strand at 55.010 kb on - strand at 55.101 kb on + strand, within GFF5852 at 55.101 kb on + strand, within GFF5852 at 55.101 kb on + strand, within GFF5852 at 55.101 kb on + strand, within GFF5852 at 55.101 kb on + strand, within GFF5852 at 55.101 kb on + strand, within GFF5852 at 55.101 kb on + strand, within GFF5852 at 55.101 kb on + strand, within GFF5852 at 55.102 kb on - strand, within GFF5852 at 55.102 kb on - strand, within GFF5852 at 55.102 kb on - strand, within GFF5852 at 55.102 kb on - strand, within GFF5852 at 55.102 kb on - strand, within GFF5852 at 55.102 kb on - strand, within GFF5852 at 55.102 kb on - strand, within GFF5852 at 55.102 kb on - strand, within GFF5852 at 55.102 kb on - strand, within GFF5852 at 55.102 kb on - strand, within GFF5852 at 55.106 kb on + strand, within GFF5852 at 55.106 kb on + strand, within GFF5852 at 55.106 kb on + strand, within GFF5852 at 55.106 kb on + strand, within GFF5852 at 55.106 kb on + strand, within GFF5852 at 55.106 kb on + strand, within GFF5852 at 55.107 kb on - strand, within GFF5852 at 55.107 kb on - strand, within GFF5852 at 55.107 kb on - strand, within GFF5852 at 55.107 kb on - strand, within GFF5852 at 55.227 kb on + strand, within GFF5852 at 55.228 kb on - strand, within GFF5852 at 55.228 kb on - strand, within GFF5852 at 55.556 kb on - strand, within GFF5852 at 55.566 kb on + strand, within GFF5852 at 55.569 kb on - strand, within GFF5852 at 55.569 kb on - strand, within GFF5852 at 55.595 kb on - strand, within GFF5852 at 55.678 kb on - strand, within GFF5852 at 55.743 kb on + strand, within GFF5852 at 55.743 kb on + strand, within GFF5852 at 55.743 kb on + strand, within GFF5852 at 55.743 kb on + strand, within GFF5852 at 55.743 kb on + strand, within GFF5852 at 55.743 kb on + strand, within GFF5852 at 55.743 kb on + strand, within GFF5852 at 55.743 kb on + strand, within GFF5852 at 55.743 kb on + strand, within GFF5852 at 55.744 kb on - strand, within GFF5852 at 55.744 kb on - strand, within GFF5852 at 55.744 kb on - strand, within GFF5852 at 55.744 kb on - strand, within GFF5852 at 55.744 kb on - strand, within GFF5852 at 55.744 kb on - strand, within GFF5852 at 55.744 kb on - strand, within GFF5852 at 55.744 kb on - strand, within GFF5852 at 55.744 kb on - strand, within GFF5852 at 55.747 kb on + strand, within GFF5852 at 55.747 kb on + strand, within GFF5852 at 55.747 kb on + strand, within GFF5852 at 55.747 kb on + strand, within GFF5852 at 55.747 kb on + strand, within GFF5852 at 55.747 kb on + strand, within GFF5852 at 55.747 kb on + strand, within GFF5852 at 55.747 kb on + strand, within GFF5852 at 55.747 kb on + strand, within GFF5852 at 55.747 kb on + strand, within GFF5852 at 55.748 kb on - strand, within GFF5852 at 55.748 kb on - strand, within GFF5852 at 55.748 kb on - strand, within GFF5852 at 55.748 kb on - strand, within GFF5852
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 53,276 + -0.0 53,449 - -0.7 53,449 - -0.1 53,468 + -0.2 53,469 - -1.2 53,497 + +0.4 53,497 + -1.0 53,497 + +0.1 53,498 - +0.2 53,498 - +0.2 53,511 + -0.3 53,511 + -0.7 53,512 - +3.2 53,512 - -0.0 53,513 - +0.6 53,706 + -0.2 53,706 + +0.3 53,707 - -0.4 53,707 - -2.2 53,707 - +1.0 53,707 - +0.1 53,723 + -0.2 53,723 + -0.2 53,724 - +0.3 53,738 + -1.0 53,764 + +0.4 53,764 + +0.1 53,765 - -0.9 53,765 - -0.4 53,787 + +0.4 53,787 + +0.6 53,788 - -0.0 53,788 - -0.0 53,788 - -0.8 53,794 + +0.5 53,794 + +0.2 53,795 - +2.0 53,795 - +0.1 53,795 - +1.0 53,795 - -0.8 53,795 - -0.0 53,795 - +1.0 53,795 - +0.5 53,840 + +0.7 53,844 + +0.8 53,844 + -2.0 53,844 + -0.1 53,844 + +0.6 53,844 + +1.4 53,844 + +2.3 53,844 + +0.5 53,844 + -0.3 53,845 - +0.3 53,845 - -0.6 53,845 - -0.9 53,845 - -0.3 53,845 - -0.9 53,845 - +1.0 53,845 - -0.3 53,845 - +0.0 53,845 - +0.2 53,845 - +0.5 53,845 - -0.5 53,845 - -0.2 53,845 - +1.6 53,845 - -1.3 53,866 + -1.2 53,866 + -0.3 53,866 + -0.5 53,867 - -0.3 53,867 - -0.1 53,867 - +0.4 53,867 - +0.4 53,867 - -0.1 53,867 - +0.5 53,867 - -0.3 53,867 - -0.6 53,984 + -0.3 53,984 + -1.0 53,985 - -0.2 53,985 - -0.3 54,019 + -0.7 54,019 + -0.8 54,019 + +2.6 54,020 - +0.2 54,087 - -0.4 54,087 - +0.0 54,099 + +0.6 54,152 - +1.4 54,193 + -0.0 54,209 - -0.0 54,463 - GFF5851 0.38 -0.2 54,463 - GFF5851 0.38 +0.3 54,532 + GFF5851 0.50 +1.0 54,533 - GFF5851 0.51 -1.2 54,592 + GFF5851 0.62 -0.3 54,646 + GFF5851 0.72 -0.1 54,646 + GFF5851 0.72 -0.8 54,647 - GFF5851 0.72 -0.7 54,647 - GFF5851 0.72 -0.7 54,672 + GFF5851 0.77 -0.2 54,672 + GFF5851 0.77 -1.5 54,673 - GFF5851 0.77 +0.1 54,673 - GFF5851 0.77 +0.4 54,674 + GFF5851 0.77 -0.3 54,675 - GFF5851 0.77 +0.0 54,675 - GFF5851 0.77 +0.1 54,690 - GFF5851 0.80 -0.0 54,795 + +0.2 54,795 + +0.0 54,796 - -1.0 54,815 + -0.7 54,847 + +0.9 54,847 + +0.2 54,847 + +0.1 54,848 - +0.6 54,848 - -0.2 54,848 - -0.2 54,848 - -1.1 54,865 + +1.6 54,865 + +1.4 54,866 - +0.4 55,009 + -0.0 55,009 + -0.0 55,009 + -0.5 55,009 + +1.0 55,009 + +0.9 55,010 - -0.8 55,010 - -0.2 55,101 + GFF5852 0.19 +0.5 55,101 + GFF5852 0.19 -0.5 55,101 + GFF5852 0.19 +0.2 55,101 + GFF5852 0.19 +0.7 55,101 + GFF5852 0.19 +0.1 55,101 + GFF5852 0.19 +0.3 55,101 + GFF5852 0.19 +1.4 55,101 + GFF5852 0.19 -0.4 55,102 - GFF5852 0.19 -0.3 55,102 - GFF5852 0.19 +0.3 55,102 - GFF5852 0.19 -0.0 55,102 - GFF5852 0.19 +1.0 55,102 - GFF5852 0.19 +0.5 55,102 - GFF5852 0.19 +1.4 55,102 - GFF5852 0.19 +0.3 55,102 - GFF5852 0.19 +0.5 55,102 - GFF5852 0.19 -0.5 55,102 - GFF5852 0.19 +0.2 55,106 + GFF5852 0.19 -2.2 55,106 + GFF5852 0.19 +0.1 55,106 + GFF5852 0.19 -0.0 55,106 + GFF5852 0.19 +0.3 55,106 + GFF5852 0.19 -0.0 55,106 + GFF5852 0.19 +0.1 55,107 - GFF5852 0.19 -1.1 55,107 - GFF5852 0.19 +0.1 55,107 - GFF5852 0.19 +1.2 55,107 - GFF5852 0.19 +0.7 55,227 + GFF5852 0.32 -0.1 55,228 - GFF5852 0.32 -0.9 55,228 - GFF5852 0.32 -0.2 55,556 - GFF5852 0.66 -0.4 55,566 + GFF5852 0.67 -0.6 55,569 - GFF5852 0.67 +0.5 55,569 - GFF5852 0.67 -0.0 55,595 - GFF5852 0.70 +0.8 55,678 - GFF5852 0.79 -0.1 55,743 + GFF5852 0.85 -0.6 55,743 + GFF5852 0.85 -0.2 55,743 + GFF5852 0.85 -0.3 55,743 + GFF5852 0.85 -0.3 55,743 + GFF5852 0.85 -0.8 55,743 + GFF5852 0.85 +0.4 55,743 + GFF5852 0.85 -0.3 55,743 + GFF5852 0.85 +0.6 55,743 + GFF5852 0.85 -0.3 55,744 - GFF5852 0.86 +0.0 55,744 - GFF5852 0.86 +1.0 55,744 - GFF5852 0.86 -0.4 55,744 - GFF5852 0.86 -0.3 55,744 - GFF5852 0.86 +0.1 55,744 - GFF5852 0.86 +0.3 55,744 - GFF5852 0.86 -0.2 55,744 - GFF5852 0.86 -0.0 55,744 - GFF5852 0.86 -0.3 55,747 + GFF5852 0.86 -1.3 55,747 + GFF5852 0.86 -0.5 55,747 + GFF5852 0.86 +0.1 55,747 + GFF5852 0.86 +0.5 55,747 + GFF5852 0.86 -0.1 55,747 + GFF5852 0.86 -0.6 55,747 + GFF5852 0.86 -0.3 55,747 + GFF5852 0.86 -0.6 55,747 + GFF5852 0.86 +0.2 55,747 + GFF5852 0.86 +0.3 55,748 - GFF5852 0.86 +0.3 55,748 - GFF5852 0.86 +0.3 55,748 - GFF5852 0.86 -0.3 55,748 - GFF5852 0.86 +0.2
Or see this region's nucleotide sequence