Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5837 and GFF5838 overlap by 4 nucleotides GFF5838 and GFF5839 overlap by 8 nucleotides GFF5839 and GFF5840 overlap by 14 nucleotides
GFF5837 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 35,295 to 36,476
GFF5837
GFF5838 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 36,473 to 38,023
GFF5838
GFF5839 - Hypothetical Cytosolic Protein, at 38,016 to 38,519
GFF5839
GFF5840 - FIG00431931: hypothetical protein, at 38,506 to 39,735
GFF5840
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -2
-1
0
1 at 35.697 kb on + strand, within GFF5837 at 35.698 kb on - strand, within GFF5837 at 36.213 kb on + strand, within GFF5837 at 36.455 kb on + strand at 36.557 kb on + strand at 36.558 kb on - strand at 36.558 kb on - strand at 36.746 kb on + strand, within GFF5838 at 37.037 kb on + strand, within GFF5838 at 37.038 kb on - strand, within GFF5838 at 37.074 kb on - strand, within GFF5838 at 37.217 kb on + strand, within GFF5838 at 37.217 kb on + strand, within GFF5838 at 37.278 kb on - strand, within GFF5838 at 37.376 kb on + strand, within GFF5838 at 37.409 kb on + strand, within GFF5838 at 37.680 kb on - strand, within GFF5838 at 37.680 kb on - strand, within GFF5838 at 38.291 kb on + strand, within GFF5839 at 38.829 kb on - strand, within GFF5840
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 35,697 + GFF5837 0.34 +0.5 35,698 - GFF5837 0.34 -0.3 36,213 + GFF5837 0.78 +0.1 36,455 + +0.0 36,557 + -0.2 36,558 - +0.1 36,558 - -1.8 36,746 + GFF5838 0.18 -0.1 37,037 + GFF5838 0.36 +1.0 37,038 - GFF5838 0.36 +0.5 37,074 - GFF5838 0.39 -0.8 37,217 + GFF5838 0.48 -0.8 37,217 + GFF5838 0.48 +0.5 37,278 - GFF5838 0.52 +0.8 37,376 + GFF5838 0.58 +0.8 37,409 + GFF5838 0.60 +0.3 37,680 - GFF5838 0.78 -0.8 37,680 - GFF5838 0.78 +0.3 38,291 + GFF5839 0.55 +0.3 38,829 - GFF5840 0.26 +0.5
Or see this region's nucleotide sequence