Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5826 and GFF5827 are separated by 29 nucleotides GFF5827 and GFF5828 are separated by 1 nucleotides GFF5828 and GFF5829 overlap by 4 nucleotides
GFF5826 - Respiratory nitrate reductase alpha chain (EC 1.7.99.4), at 21,660 to 25,478
GFF5826
GFF5827 - Respiratory nitrate reductase beta chain (EC 1.7.99.4), at 25,508 to 27,040
GFF5827
GFF5828 - Respiratory nitrate reductase delta chain (EC 1.7.99.4), at 27,042 to 27,755
GFF5828
GFF5829 - Respiratory nitrate reductase gamma chain (EC 1.7.99.4), at 27,752 to 28,483
GFF5829
Position (kb) 25
26
27
28 Strain fitness (log2 ratio) -1
0
1 at 24.566 kb on - strand, within GFF5826 at 24.795 kb on + strand, within GFF5826 at 24.853 kb on - strand, within GFF5826 at 25.021 kb on - strand, within GFF5826 at 25.320 kb on + strand at 25.348 kb on - strand at 25.453 kb on - strand at 25.619 kb on + strand at 26.211 kb on - strand, within GFF5827 at 26.213 kb on + strand, within GFF5827 at 26.390 kb on + strand, within GFF5827 at 26.390 kb on + strand, within GFF5827 at 26.576 kb on + strand, within GFF5827 at 26.576 kb on + strand, within GFF5827 at 26.678 kb on + strand, within GFF5827 at 26.843 kb on + strand, within GFF5827 at 26.844 kb on - strand, within GFF5827 at 26.868 kb on - strand, within GFF5827 at 26.868 kb on - strand, within GFF5827 at 27.791 kb on + strand at 28.025 kb on + strand, within GFF5829 at 28.025 kb on + strand, within GFF5829 at 28.025 kb on + strand, within GFF5829 at 28.026 kb on - strand, within GFF5829
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 24,566 - GFF5826 0.76 +0.3 24,795 + GFF5826 0.82 +1.6 24,853 - GFF5826 0.84 +0.4 25,021 - GFF5826 0.88 -0.2 25,320 + -0.0 25,348 - +0.7 25,453 - -0.3 25,619 + +0.4 26,211 - GFF5827 0.46 +1.0 26,213 + GFF5827 0.46 -0.1 26,390 + GFF5827 0.58 +0.6 26,390 + GFF5827 0.58 +0.2 26,576 + GFF5827 0.70 +0.3 26,576 + GFF5827 0.70 -1.3 26,678 + GFF5827 0.76 -0.2 26,843 + GFF5827 0.87 +0.1 26,844 - GFF5827 0.87 +0.1 26,868 - GFF5827 0.89 -0.3 26,868 - GFF5827 0.89 +1.7 27,791 + +0.3 28,025 + GFF5829 0.37 +0.5 28,025 + GFF5829 0.37 +0.1 28,025 + GFF5829 0.37 +0.1 28,026 - GFF5829 0.37 -0.0
Or see this region's nucleotide sequence