Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5535

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,539,600	+		GFF5533	0.56	-1.7
2,539,601	-		GFF5533	0.56	-0.4
2,539,601	-		GFF5533	0.56	+0.5
2,539,601	-		GFF5533	0.56	-0.6
2,539,651	+		GFF5533	0.61	-0.4
2,539,661	-		GFF5533	0.62	+1.3
2,539,729	+		GFF5533	0.68	+0.2
2,539,729	+		GFF5533	0.68	+0.8
2,539,730	-		GFF5533	0.68	+1.5
2,539,730	-		GFF5533	0.68	-1.7
2,539,730	-		GFF5533	0.68	-0.3
2,539,957	+		GFF5533	0.89	+1.6
2,539,958	-		GFF5533	0.89	-1.1
2,539,958	-		GFF5533	0.89	-0.3
2,539,958	-		GFF5533	0.89	+0.4
2,539,981	+				+0.5
2,539,981	+				+0.1
2,539,982	-				+0.5
2,539,982	-				-0.8
2,539,982	-				+0.0
2,539,982	-				-0.3
2,539,982	-				+0.3
2,539,997	-				+1.3
2,540,011	+				+0.5
2,540,012	-				-0.4
2,540,014	+				+0.7
2,540,014	+				-0.5
2,540,015	-				-0.1
2,540,015	-				+1.9
2,540,162	+		GFF5534	0.16	-0.7
2,540,162	+		GFF5534	0.16	-0.1
2,540,162	+		GFF5534	0.16	-0.1
2,540,162	+		GFF5534	0.16	-0.1
2,540,163	-		GFF5534	0.17	+0.3
2,540,163	-		GFF5534	0.17	-0.9
2,540,363	+		GFF5534	0.76	+1.3
2,540,446	+				+0.2
2,540,447	-				+0.9
2,540,447	-				+1.3
2,540,519	+				+0.9
2,540,519	+				+0.3
2,540,519	+				+0.1
2,540,519	+				+0.2
2,540,519	+				+0.1
2,540,520	-				-0.1
2,540,520	-				-0.3
2,540,562	+				+0.3
2,540,563	-				+0.2
2,540,563	-				+1.9
2,540,830	-		GFF5535	0.36	+0.2
2,540,940	+		GFF5535	0.49	+0.2
2,541,246	+		GFF5535	0.86	+1.5
2,541,246	+		GFF5535	0.86	-0.3
2,541,246	+		GFF5535	0.86	+0.0
2,541,246	+		GFF5535	0.86	+0.3
2,541,246	+		GFF5535	0.86	-0.2
2,541,246	+		GFF5535	0.86	+0.2
2,541,246	+		GFF5535	0.86	+0.3
2,541,246	+		GFF5535	0.86	-0.4
2,541,247	-		GFF5535	0.86	+0.7
2,541,247	-		GFF5535	0.86	-1.4
2,541,365	+				-0.2
2,541,365	+				-0.3
2,541,462	+				-0.2
2,541,463	-				+0.5
2,541,644	+		GFF5536	0.10	+0.3
2,541,644	+		GFF5536	0.10	+0.6
2,541,645	-		GFF5536	0.10	+0.7
2,541,734	+		GFF5536	0.20	-0.2
2,541,746	+		GFF5536	0.21	+0.4
2,541,747	-		GFF5536	0.21	+0.4
2,541,747	-		GFF5536	0.21	-0.9
2,541,747	-		GFF5536	0.21	+0.6
2,541,930	-		GFF5536	0.41	-0.8
2,541,971	+		GFF5536	0.45	+0.0
2,541,971	+		GFF5536	0.45	+0.4
2,541,971	+		GFF5536	0.45	+0.9
2,541,972	-		GFF5536	0.45	+0.3
2,541,972	-		GFF5536	0.45	-0.2
2,541,972	-		GFF5536	0.45	-1.4
2,542,245	+		GFF5536	0.75	+0.5