Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5228

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,243,763	+				+0.3
2,243,763	+				-0.1
2,243,764	-		GFF5227	0.10	-0.4
2,243,764	-		GFF5227	0.10	+0.2
2,243,916	-		GFF5227	0.27	-1.0
2,243,949	-		GFF5227	0.31	-0.0
2,244,153	-		GFF5227	0.54	+0.4
2,244,344	+		GFF5227	0.76	+0.5
2,244,344	+		GFF5227	0.76	+0.3
2,244,344	+		GFF5227	0.76	+0.1
2,244,344	+		GFF5227	0.76	+0.5
2,244,582	+				+0.7
2,244,583	-				+0.6
2,244,584	+				+0.2
2,244,584	+				+0.1
2,244,584	+				-0.1
2,244,585	-				+0.1
2,244,792	+		GFF5228	0.29	-1.6
2,244,792	+		GFF5228	0.29	-1.7
2,244,792	+		GFF5228	0.29	-2.0
2,244,792	+		GFF5228	0.29	-2.0
2,244,792	+		GFF5228	0.29	-4.0
2,244,792	+		GFF5228	0.29	-3.0
2,244,792	+		GFF5228	0.29	-2.2
2,244,793	-		GFF5228	0.29	-3.1
2,244,793	-		GFF5228	0.29	-3.4
2,244,793	-		GFF5228	0.29	-1.6
2,244,793	-		GFF5228	0.29	-2.9
2,244,793	-		GFF5228	0.29	-3.8
2,244,793	-		GFF5228	0.29	-2.0
2,244,795	+		GFF5228	0.30	-2.3
2,244,796	-		GFF5228	0.30	-2.9
2,244,796	-		GFF5228	0.30	-2.3
2,244,798	+		GFF5228	0.30	-1.0
2,244,798	+		GFF5228	0.30	-2.9
2,244,798	+		GFF5228	0.30	-2.0
2,244,799	-		GFF5228	0.30	-0.5
2,244,822	+		GFF5228	0.33	-2.2
2,244,822	+		GFF5228	0.33	-1.5
2,244,822	+		GFF5228	0.33	-1.5
2,244,822	+		GFF5228	0.33	-2.7
2,244,846	+		GFF5228	0.37	-1.0
2,244,846	+		GFF5228	0.37	-1.1
2,244,846	+		GFF5228	0.37	-2.2
2,244,846	+		GFF5228	0.37	-2.4
2,244,846	-		GFF5228	0.37	-1.7
2,244,960	+		GFF5228	0.54	-1.2
2,244,960	+		GFF5228	0.54	-2.3
2,244,960	+		GFF5228	0.54	-1.4
2,244,960	+		GFF5228	0.54	-3.6
2,244,960	+		GFF5228	0.54	-3.2
2,244,961	-		GFF5228	0.54	-1.2
2,244,961	-		GFF5228	0.54	-1.9
2,244,961	-		GFF5228	0.54	-2.7
2,244,961	-		GFF5228	0.54	+1.0
2,244,961	-		GFF5228	0.54	-1.9
2,244,961	-		GFF5228	0.54	-3.7
2,245,068	+		GFF5228	0.70	-0.6
2,245,068	+		GFF5228	0.70	-0.6
2,245,068	+		GFF5228	0.70	-1.6
2,245,068	+		GFF5228	0.70	-2.5
2,245,069	-		GFF5228	0.70	-0.6
2,245,069	-		GFF5228	0.70	-0.6
2,245,260	+				-3.1
2,245,261	-				-3.3
2,245,309	+				+0.5
2,245,310	-				-1.2
2,245,310	-				+0.4
2,245,314	+				+0.4
2,245,314	+				-0.1
2,245,314	+				+1.2
2,245,314	+				-0.2
2,245,318	+				+0.2
2,245,319	-				-0.1
2,245,409	+				+0.0
2,245,409	+				-0.5
2,245,409	+				+0.4
2,245,409	+				+0.0
2,245,409	+				-0.1
2,245,410	-				-0.2
2,245,410	-				-1.2
2,245,410	-				-0.0
2,245,410	-				-0.4
2,245,410	-				-0.3
2,245,677	-		GFF5229	0.53	-0.4
2,245,677	-		GFF5229	0.53	+0.2
2,245,677	-		GFF5229	0.53	-0.5
2,245,677	-		GFF5229	0.53	+0.1
2,245,677	-		GFF5229	0.53	-0.4
2,245,677	-		GFF5229	0.53	-0.6
2,245,677	-		GFF5229	0.53	-0.2
2,245,694	+		GFF5229	0.57	+0.6
2,245,695	-		GFF5229	0.57	-1.4
2,245,766	+		GFF5229	0.70	+0.0
2,245,766	+		GFF5229	0.70	-0.2
2,245,766	+		GFF5229	0.70	+2.5
2,245,767	-		GFF5229	0.70	-0.2
2,245,772	+		GFF5229	0.71	+0.0
2,245,972	+				+0.5
2,246,052	+				+0.4
2,246,232	-		GFF5230	0.22	-1.4