Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5070

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,084,476	+		GFF5068	0.64	-0.3
2,084,656	+		GFF5068	0.85	+0.3
2,084,656	+		GFF5068	0.85	-0.1
2,084,656	+		GFF5068	0.85	-0.3
2,084,657	-		GFF5068	0.85	+0.3
2,084,943	+				-0.1
2,084,945	-				+0.9
2,084,961	+				-0.7
2,084,961	+				-0.3
2,084,962	-				+0.1
2,085,040	-				-0.3
2,085,054	+				-0.9
2,085,090	+		GFF5069	0.21	-0.5
2,085,091	-		GFF5069	0.22	-1.3
2,085,165	+		GFF5069	0.47	-0.4
2,085,165	+		GFF5069	0.47	+0.1
2,085,166	-		GFF5069	0.47	+0.9
2,085,166	-		GFF5069	0.47	-1.7
2,085,318	+				+0.7
2,085,781	+		GFF5070	0.38	-0.1
2,085,781	+		GFF5070	0.38	+0.0
2,085,782	-		GFF5070	0.39	+0.9
2,085,782	-		GFF5070	0.39	-1.5
2,085,782	-		GFF5070	0.39	-0.6
2,085,782	-		GFF5070	0.39	-0.2
2,085,946	+		GFF5070	0.58	+0.3
2,086,145	-		GFF5070	0.81	+0.5
2,086,169	-		GFF5070	0.84	+0.2
2,086,169	-		GFF5070	0.84	-0.6
2,086,445	+		GFF5071	0.11	+0.1
2,086,446	-		GFF5071	0.11	+0.3
2,086,446	-		GFF5071	0.11	-0.6
2,086,446	-		GFF5071	0.11	+0.0
2,086,682	+		GFF5071	0.35	-1.2
2,086,685	+		GFF5071	0.35	+0.3
2,086,985	+		GFF5071	0.65	-0.4
2,087,025	-		GFF5071	0.69	+0.9
2,087,064	-		GFF5071	0.73	-0.4
2,087,102	+		GFF5071	0.76	+0.1
2,087,102	+		GFF5071	0.76	+0.6
2,087,103	-		GFF5071	0.77	-0.7
2,087,103	-		GFF5071	0.77	-0.4
2,087,301	-				+0.0
2,087,301	-				+0.4
2,087,301	-				+0.1