Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4943 and GFF4944 are separated by 182 nucleotides GFF4944 and GFF4945 are separated by 119 nucleotides GFF4945 and GFF4946 are separated by 11 nucleotides
GFF4943 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 1,962,194 to 1,962,595
GFF4943
GFF4944 - transcriptional regulator, TetR family, at 1,962,778 to 1,963,368
GFF4944
GFF4945 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 1,963,488 to 1,964,504
GFF4945
GFF4946 - Cytosine deaminase (EC 3.5.4.1), at 1,964,516 to 1,965,775
GFF4946
Position (kb) 1963
1964
1965 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1962.643 kb on - strand at 1962.914 kb on - strand, within GFF4944 at 1962.916 kb on + strand, within GFF4944 at 1962.916 kb on + strand, within GFF4944 at 1962.916 kb on + strand, within GFF4944 at 1962.916 kb on + strand, within GFF4944 at 1962.916 kb on + strand, within GFF4944 at 1962.917 kb on - strand, within GFF4944 at 1962.917 kb on - strand, within GFF4944 at 1962.917 kb on - strand, within GFF4944 at 1962.917 kb on - strand, within GFF4944 at 1962.917 kb on - strand, within GFF4944 at 1962.917 kb on - strand, within GFF4944 at 1962.940 kb on + strand, within GFF4944 at 1962.940 kb on + strand, within GFF4944 at 1962.940 kb on + strand, within GFF4944 at 1962.941 kb on - strand, within GFF4944 at 1962.941 kb on - strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.031 kb on - strand, within GFF4944 at 1963.031 kb on - strand, within GFF4944 at 1963.031 kb on - strand, within GFF4944 at 1963.426 kb on - strand at 1963.614 kb on + strand, within GFF4945 at 1963.614 kb on + strand, within GFF4945 at 1963.614 kb on + strand, within GFF4945 at 1963.614 kb on + strand, within GFF4945 at 1963.614 kb on + strand, within GFF4945 at 1963.614 kb on + strand, within GFF4945 at 1963.680 kb on + strand, within GFF4945 at 1963.680 kb on + strand, within GFF4945 at 1963.681 kb on - strand, within GFF4945 at 1963.681 kb on - strand, within GFF4945 at 1963.708 kb on - strand, within GFF4945 at 1963.746 kb on + strand, within GFF4945 at 1964.121 kb on + strand, within GFF4945 at 1964.121 kb on + strand, within GFF4945 at 1964.121 kb on + strand, within GFF4945 at 1964.203 kb on - strand, within GFF4945 at 1964.203 kb on - strand, within GFF4945 at 1964.203 kb on - strand, within GFF4945 at 1964.389 kb on - strand, within GFF4945 at 1964.925 kb on + strand, within GFF4946
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 1,962,643 - +1.3 1,962,914 - GFF4944 0.23 +0.2 1,962,916 + GFF4944 0.23 -2.6 1,962,916 + GFF4944 0.23 -1.1 1,962,916 + GFF4944 0.23 -1.9 1,962,916 + GFF4944 0.23 -2.0 1,962,916 + GFF4944 0.23 -1.5 1,962,917 - GFF4944 0.24 -2.4 1,962,917 - GFF4944 0.24 -2.1 1,962,917 - GFF4944 0.24 -1.1 1,962,917 - GFF4944 0.24 -2.1 1,962,917 - GFF4944 0.24 -1.9 1,962,917 - GFF4944 0.24 -1.5 1,962,940 + GFF4944 0.27 -0.4 1,962,940 + GFF4944 0.27 -2.8 1,962,940 + GFF4944 0.27 -0.9 1,962,941 - GFF4944 0.28 -1.9 1,962,941 - GFF4944 0.28 -1.7 1,963,030 + GFF4944 0.43 -1.9 1,963,030 + GFF4944 0.43 -2.1 1,963,030 + GFF4944 0.43 -1.4 1,963,030 + GFF4944 0.43 -2.8 1,963,030 + GFF4944 0.43 -2.5 1,963,030 + GFF4944 0.43 +0.9 1,963,030 + GFF4944 0.43 -1.7 1,963,031 - GFF4944 0.43 -2.0 1,963,031 - GFF4944 0.43 -3.0 1,963,031 - GFF4944 0.43 -1.3 1,963,426 - +0.7 1,963,614 + GFF4945 0.12 -0.3 1,963,614 + GFF4945 0.12 -0.3 1,963,614 + GFF4945 0.12 +0.5 1,963,614 + GFF4945 0.12 -0.1 1,963,614 + GFF4945 0.12 +1.4 1,963,614 + GFF4945 0.12 -0.0 1,963,680 + GFF4945 0.19 -0.2 1,963,680 + GFF4945 0.19 -0.1 1,963,681 - GFF4945 0.19 +0.4 1,963,681 - GFF4945 0.19 +0.3 1,963,708 - GFF4945 0.22 +0.6 1,963,746 + GFF4945 0.25 -0.2 1,964,121 + GFF4945 0.62 -0.1 1,964,121 + GFF4945 0.62 +0.4 1,964,121 + GFF4945 0.62 -0.5 1,964,203 - GFF4945 0.70 +0.2 1,964,203 - GFF4945 0.70 -0.3 1,964,203 - GFF4945 0.70 +0.5 1,964,389 - GFF4945 0.89 +1.4 1,964,925 + GFF4946 0.32 +0.7
Or see this region's nucleotide sequence