Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4938

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,954,869	+		GFF4937	0.65	-0.0
1,955,016	+		GFF4937	0.77	+0.3
1,955,017	-		GFF4937	0.77	+0.7
1,955,017	-		GFF4937	0.77	+0.6
1,955,044	-		GFF4937	0.79	+0.2
1,955,044	-		GFF4937	0.79	-0.4
1,955,411	+		GFF4938	0.12	-1.1
1,955,412	-		GFF4938	0.12	-0.2
1,955,420	+		GFF4938	0.13	-0.7
1,955,420	+		GFF4938	0.13	+0.5
1,955,420	+		GFF4938	0.13	+0.6
1,955,493	-		GFF4938	0.20	-0.1
1,955,558	-		GFF4938	0.27	-0.6
1,955,558	-		GFF4938	0.27	-0.1
1,955,558	-		GFF4938	0.27	-0.0
1,955,558	-		GFF4938	0.27	+0.6
1,955,639	+		GFF4938	0.36	-0.2
1,955,639	+		GFF4938	0.36	-0.1
1,955,640	-		GFF4938	0.36	-0.2
1,955,693	+		GFF4938	0.42	-1.1
1,955,693	+		GFF4938	0.42	+0.2
1,956,340	+				-0.1
1,956,340	+				-1.1
1,956,340	+				-0.3
1,956,341	-				-0.5
1,956,408	-				-0.3
1,956,742	+		GFF4939	0.28	-0.2
1,956,802	+		GFF4939	0.33	+0.1
1,956,802	+		GFF4939	0.33	+0.1
1,956,803	-		GFF4939	0.33	-0.1
1,956,803	-		GFF4939	0.33	-0.8
1,956,809	-		GFF4939	0.34	+0.2
1,956,809	-		GFF4939	0.34	-0.3
1,956,838	-		GFF4939	0.36	-0.2
1,957,207	+		GFF4939	0.66	-0.7