Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4839

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,847,266	+		GFF4837	0.73	+0.6
1,847,266	+		GFF4837	0.73	+0.7
1,847,267	-		GFF4837	0.73	+0.1
1,847,267	-		GFF4837	0.73	-0.2
1,847,267	-		GFF4837	0.73	+1.5
1,847,654	+		GFF4838	0.25	-0.7
1,847,655	-		GFF4838	0.25	-0.4
1,847,655	-		GFF4838	0.25	-0.4
1,847,655	-		GFF4838	0.25	-1.1
1,847,750	+		GFF4838	0.38	-0.7
1,847,750	+		GFF4838	0.38	-1.2
1,847,750	+		GFF4838	0.38	-0.9
1,847,751	-		GFF4838	0.38	+1.2
1,847,751	-		GFF4838	0.38	-1.0
1,848,128	+		GFF4838	0.88	-0.8
1,848,131	+		GFF4838	0.89	-1.1
1,848,131	+		GFF4838	0.89	+0.3
1,848,131	+		GFF4838	0.89	-0.1
1,848,132	-		GFF4838	0.89	-0.1
1,848,223	-				-1.3
1,848,661	+		GFF4839	0.29	+0.9
1,849,039	+		GFF4839	0.55	+0.1
1,849,039	+		GFF4839	0.55	+2.9
1,849,039	+		GFF4839	0.55	+0.6
1,849,039	+		GFF4839	0.55	+0.9
1,849,040	-		GFF4839	0.55	-0.7
1,849,510	+		GFF4839	0.88	+0.1
1,849,511	-		GFF4839	0.88	+0.6
1,849,511	-		GFF4839	0.88	-0.0
1,849,511	-		GFF4839	0.88	+1.3
1,849,511	-		GFF4839	0.88	-0.2
1,849,511	-		GFF4839	0.88	-0.5
1,849,639	+				-0.2
1,849,698	+				+0.1
1,849,991	+		GFF4840	0.40	+0.0
1,850,238	+		GFF4840	0.76	-0.7
1,850,238	+		GFF4840	0.76	+1.5
1,850,238	+		GFF4840	0.76	+0.2
1,850,239	-		GFF4840	0.76	-0.3
1,850,239	-		GFF4840	0.76	-0.0
1,850,239	-		GFF4840	0.76	-0.5
1,850,337	+				-0.5
1,850,337	+				-0.2
1,850,338	-				-0.1
1,850,358	+				+0.8
1,850,517	-		GFF4841	0.37	+0.3