Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4765 and GFF4766 overlap by 4 nucleotides GFF4766 and GFF4767 are separated by 31 nucleotides
GFF4765 - glycosyl transferase, group 1, at 1,772,274 to 1,773,389
GFF4765
GFF4766 - Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18), at 1,773,386 to 1,775,497
GFF4766
GFF4767 - Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) AsnH, at 1,775,529 to 1,777,436
GFF4767
Position (kb) 1773
1774
1775
1776 Strain fitness (log2 ratio) -1
0
1
2 at 1772.629 kb on + strand, within GFF4765 at 1773.106 kb on + strand, within GFF4765 at 1773.106 kb on + strand, within GFF4765 at 1773.107 kb on - strand, within GFF4765 at 1773.107 kb on - strand, within GFF4765 at 1773.107 kb on - strand, within GFF4765 at 1773.664 kb on - strand, within GFF4766 at 1773.702 kb on + strand, within GFF4766 at 1773.702 kb on + strand, within GFF4766 at 1773.964 kb on - strand, within GFF4766 at 1774.182 kb on + strand, within GFF4766 at 1774.182 kb on + strand, within GFF4766 at 1774.183 kb on - strand, within GFF4766 at 1774.183 kb on - strand, within GFF4766 at 1774.183 kb on - strand, within GFF4766 at 1774.527 kb on + strand, within GFF4766 at 1774.527 kb on + strand, within GFF4766 at 1774.528 kb on - strand, within GFF4766 at 1774.528 kb on - strand, within GFF4766 at 1774.560 kb on + strand, within GFF4766 at 1774.560 kb on + strand, within GFF4766 at 1774.561 kb on - strand, within GFF4766 at 1774.605 kb on + strand, within GFF4766 at 1774.690 kb on - strand, within GFF4766 at 1774.690 kb on - strand, within GFF4766 at 1774.690 kb on - strand, within GFF4766 at 1775.040 kb on + strand, within GFF4766 at 1775.046 kb on + strand, within GFF4766 at 1775.047 kb on - strand, within GFF4766 at 1775.047 kb on - strand, within GFF4766 at 1775.056 kb on - strand, within GFF4766 at 1775.106 kb on + strand, within GFF4766 at 1775.106 kb on + strand, within GFF4766 at 1775.107 kb on - strand, within GFF4766 at 1775.107 kb on - strand, within GFF4766 at 1775.403 kb on + strand at 1775.663 kb on - strand at 1775.770 kb on + strand, within GFF4767 at 1775.770 kb on + strand, within GFF4767 at 1775.975 kb on - strand, within GFF4767 at 1775.984 kb on - strand, within GFF4767 at 1776.056 kb on - strand, within GFF4767 at 1776.136 kb on + strand, within GFF4767 at 1776.136 kb on + strand, within GFF4767 at 1776.217 kb on + strand, within GFF4767 at 1776.430 kb on + strand, within GFF4767
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 1,772,629 + GFF4765 0.32 +1.1 1,773,106 + GFF4765 0.75 -0.2 1,773,106 + GFF4765 0.75 -0.4 1,773,107 - GFF4765 0.75 +0.1 1,773,107 - GFF4765 0.75 +2.3 1,773,107 - GFF4765 0.75 -1.3 1,773,664 - GFF4766 0.13 +0.3 1,773,702 + GFF4766 0.15 +0.3 1,773,702 + GFF4766 0.15 +0.6 1,773,964 - GFF4766 0.27 -0.7 1,774,182 + GFF4766 0.38 +0.6 1,774,182 + GFF4766 0.38 +0.5 1,774,183 - GFF4766 0.38 +0.7 1,774,183 - GFF4766 0.38 -0.2 1,774,183 - GFF4766 0.38 -0.1 1,774,527 + GFF4766 0.54 -0.2 1,774,527 + GFF4766 0.54 +0.3 1,774,528 - GFF4766 0.54 +0.3 1,774,528 - GFF4766 0.54 +0.3 1,774,560 + GFF4766 0.56 +1.1 1,774,560 + GFF4766 0.56 -0.5 1,774,561 - GFF4766 0.56 -0.1 1,774,605 + GFF4766 0.58 +0.3 1,774,690 - GFF4766 0.62 +1.3 1,774,690 - GFF4766 0.62 +0.5 1,774,690 - GFF4766 0.62 +0.3 1,775,040 + GFF4766 0.78 -0.2 1,775,046 + GFF4766 0.79 +0.3 1,775,047 - GFF4766 0.79 +0.1 1,775,047 - GFF4766 0.79 +0.7 1,775,056 - GFF4766 0.79 -0.2 1,775,106 + GFF4766 0.81 +1.3 1,775,106 + GFF4766 0.81 -0.0 1,775,107 - GFF4766 0.81 -0.3 1,775,107 - GFF4766 0.81 +0.1 1,775,403 + -1.3 1,775,663 - +0.3 1,775,770 + GFF4767 0.13 +0.1 1,775,770 + GFF4767 0.13 +0.2 1,775,975 - GFF4767 0.23 -0.7 1,775,984 - GFF4767 0.24 +0.1 1,776,056 - GFF4767 0.28 +0.5 1,776,136 + GFF4767 0.32 -0.1 1,776,136 + GFF4767 0.32 +0.1 1,776,217 + GFF4767 0.36 -0.1 1,776,430 + GFF4767 0.47 -0.7
Or see this region's nucleotide sequence