Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4762

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,767,606	+		GFF4760	0.58	+1.3
1,767,607	-		GFF4760	0.59	-0.3
1,767,612	+		GFF4760	0.59	+0.1
1,767,613	-		GFF4760	0.59	+1.3
1,767,613	-		GFF4760	0.59	+0.7
1,767,613	-		GFF4760	0.59	+0.8
1,767,615	+		GFF4760	0.59	+0.6
1,767,615	+		GFF4760	0.59	-1.0
1,767,616	-		GFF4760	0.59	+0.0
1,767,616	-		GFF4760	0.59	-1.1
1,767,616	-		GFF4760	0.59	-0.3
1,767,616	-		GFF4760	0.59	-0.5
1,768,050	+				-0.2
1,768,050	+				-0.4
1,768,050	+				+0.1
1,768,050	+				-0.6
1,768,051	-				+0.3
1,768,051	-				+0.0
1,768,179	-				-0.2
1,768,179	-				-0.5
1,768,636	+		GFF4762	0.25	+0.2
1,768,840	+		GFF4762	0.42	-0.8
1,768,840	+		GFF4762	0.42	-0.0
1,768,841	-		GFF4762	0.42	-0.3
1,769,149	+		GFF4762	0.68	-0.4
1,769,149	+		GFF4762	0.68	+0.7
1,769,149	+		GFF4762	0.68	-0.2
1,769,149	+		GFF4762	0.68	-0.0
1,769,149	+		GFF4762	0.68	-0.2
1,769,149	+		GFF4762	0.68	-0.1
1,769,150	-		GFF4762	0.68	+0.2
1,769,150	-		GFF4762	0.68	-1.2
1,769,150	-		GFF4762	0.68	-0.8
1,769,153	-		GFF4762	0.69	-0.9
1,769,234	-		GFF4762	0.75	-0.4
1,769,234	-		GFF4762	0.75	+0.1
1,769,272	+		GFF4762	0.79	+0.1
1,769,476	+				+0.2
1,769,622	+				+0.0
1,769,625	+				-0.8
1,769,625	+				-0.1
1,769,625	+				-0.3
1,769,754	+		GFF4763	0.16	+0.4
1,769,755	-		GFF4763	0.16	+1.5
1,769,771	-		GFF4763	0.17	-0.7
1,769,877	+		GFF4763	0.24	+1.1
1,769,877	+		GFF4763	0.24	-0.3
1,769,877	+		GFF4763	0.24	+0.8
1,769,877	+		GFF4763	0.24	+0.5
1,769,877	+		GFF4763	0.24	+0.0
1,769,877	-		GFF4763	0.24	+0.2
1,769,878	-		GFF4763	0.24	+0.8
1,769,977	-		GFF4763	0.30	+0.3
1,770,100	-		GFF4763	0.38	-0.5
1,770,202	-		GFF4763	0.45	-0.7
1,770,225	+		GFF4763	0.46	-0.7
1,770,225	+		GFF4763	0.46	-0.1
1,770,265	-		GFF4763	0.49	+0.4
1,770,477	+		GFF4763	0.63	-2.1
1,770,477	+		GFF4763	0.63	-0.2
1,770,478	-		GFF4763	0.63	-0.7
1,770,478	-		GFF4763	0.63	+0.6