Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4474

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,401,159	-				+0.4
1,401,506	+		GFF4473	0.40	-0.5
1,402,097	-				+0.5
1,402,397	-		GFF4474	0.15	+0.4
1,402,397	-		GFF4474	0.15	+0.6
1,402,571	-		GFF4474	0.22	+1.1
1,402,571	-		GFF4474	0.22	+0.5
1,402,772	-		GFF4474	0.29	+0.4
1,403,782	+		GFF4474	0.66	+0.0
1,404,172	+		GFF4474	0.80	+0.2
1,404,172	+		GFF4474	0.80	+0.2
1,404,172	+		GFF4474	0.80	-0.5
1,404,173	-		GFF4474	0.80	-0.5
1,404,173	-		GFF4474	0.80	-0.1
1,404,286	+		GFF4474	0.85	-1.0
1,404,287	-		GFF4474	0.85	+0.3
1,404,529	+				-0.8
1,404,530	-				-0.4
1,404,616	-				+0.5
1,405,028	+		GFF4475	0.44	-1.1
1,405,028	+		GFF4475	0.44	+0.3
1,405,028	-		GFF4475	0.44	-0.3
1,405,029	-		GFF4475	0.44	-0.5
1,405,029	-		GFF4475	0.44	+0.1
1,405,029	-		GFF4475	0.44	-0.4
1,405,122	-		GFF4475	0.57	+0.2
1,405,122	-		GFF4475	0.57	-1.1
1,405,122	-		GFF4475	0.57	-0.0
1,405,165	-		GFF4475	0.63	+0.9
1,405,165	-		GFF4475	0.63	-0.5
1,405,308	-		GFF4475	0.82	+0.3
1,405,371	-				-0.6
1,405,520	+				+0.1
1,405,520	+				-0.5
1,405,520	+				+0.4
1,405,521	-				+0.1
1,405,523	+				-0.1
1,405,523	+				+0.9
1,405,637	+		GFF4476	0.15	+1.3
1,405,637	+		GFF4476	0.15	+1.0
1,405,637	+		GFF4476	0.15	+0.9
1,405,637	+		GFF4476	0.15	+0.2