Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4214

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4212 and GFF4213 are separated by 33 nucleotidesGFF4213 and GFF4214 are separated by 31 nucleotidesGFF4214 and GFF4215 are separated by 76 nucleotidesGFF4215 and GFF4216 are separated by 38 nucleotides GFF4212 - Ribose 5-phosphate isomerase A (EC 5.3.1.6), at 1,124,578 to 1,125,249 GFF4212 GFF4213 - FIG00932012: hypothetical protein, at 1,125,283 to 1,125,933 GFF4213 GFF4214 - Oligopeptidase A (EC 3.4.24.70), at 1,125,965 to 1,128,046 GFF4214 GFF4215 - FIG004454: RNA binding protein, at 1,128,123 to 1,128,599 GFF4215 GFF4216 - Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-), at 1,128,638 to 1,129,315 GFF4216 Position (kb) 1125 1126 1127 1128 1129Strain fitness (log2 ratio) -2 -1 0 1 2at 1125.437 kb on + strand, within GFF4213at 1125.437 kb on + strand, within GFF4213at 1125.468 kb on - strand, within GFF4213at 1125.510 kb on - strand, within GFF4213at 1125.617 kb on + strand, within GFF4213at 1125.617 kb on + strand, within GFF4213at 1125.617 kb on + strand, within GFF4213at 1125.617 kb on + strand, within GFF4213at 1125.617 kb on + strand, within GFF4213at 1125.618 kb on - strand, within GFF4213at 1125.618 kb on - strand, within GFF4213at 1125.618 kb on - strand, within GFF4213at 1125.683 kb on + strand, within GFF4213at 1125.683 kb on + strand, within GFF4213at 1125.683 kb on + strand, within GFF4213at 1125.684 kb on - strand, within GFF4213at 1125.684 kb on - strand, within GFF4213at 1125.726 kb on - strand, within GFF4213at 1125.943 kb on + strandat 1125.944 kb on - strandat 1125.944 kb on - strandat 1126.080 kb on + strandat 1126.149 kb on + strandat 1126.149 kb on + strandat 1126.150 kb on - strandat 1126.150 kb on - strandat 1126.150 kb on - strandat 1126.182 kb on + strand, within GFF4214at 1126.182 kb on + strand, within GFF4214at 1126.182 kb on + strand, within GFF4214at 1126.182 kb on + strand, within GFF4214at 1126.183 kb on - strand, within GFF4214at 1126.183 kb on - strand, within GFF4214at 1126.183 kb on - strand, within GFF4214at 1126.188 kb on + strand, within GFF4214at 1126.188 kb on + strand, within GFF4214at 1126.188 kb on + strand, within GFF4214at 1126.188 kb on + strand, within GFF4214at 1126.188 kb on + strand, within GFF4214at 1126.189 kb on - strand, within GFF4214at 1126.189 kb on - strand, within GFF4214at 1126.189 kb on - strand, within GFF4214at 1126.189 kb on - strand, within GFF4214at 1126.189 kb on - strand, within GFF4214at 1126.191 kb on + strand, within GFF4214at 1126.248 kb on + strand, within GFF4214at 1126.249 kb on - strand, within GFF4214at 1126.399 kb on + strand, within GFF4214at 1126.401 kb on + strand, within GFF4214at 1126.401 kb on + strand, within GFF4214at 1126.402 kb on - strand, within GFF4214at 1126.402 kb on - strand, within GFF4214at 1126.402 kb on - strand, within GFF4214at 1126.806 kb on + strand, within GFF4214at 1126.807 kb on - strand, within GFF4214at 1126.807 kb on - strand, within GFF4214at 1126.858 kb on - strand, within GFF4214at 1126.968 kb on + strand, within GFF4214at 1126.969 kb on - strand, within GFF4214at 1126.999 kb on - strand, within GFF4214at 1127.028 kb on + strand, within GFF4214at 1127.028 kb on + strand, within GFF4214at 1127.029 kb on - strand, within GFF4214at 1127.105 kb on - strand, within GFF4214at 1127.202 kb on + strand, within GFF4214at 1127.202 kb on + strand, within GFF4214at 1127.332 kb on - strand, within GFF4214at 1127.382 kb on + strand, within GFF4214at 1127.382 kb on + strand, within GFF4214at 1127.382 kb on + strand, within GFF4214at 1127.383 kb on - strand, within GFF4214at 1127.694 kb on + strand, within GFF4214at 1127.694 kb on + strand, within GFF4214at 1127.694 kb on + strand, within GFF4214at 1127.694 kb on + strand, within GFF4214at 1127.694 kb on + strand, within GFF4214at 1127.695 kb on - strand, within GFF4214at 1127.695 kb on - strand, within GFF4214at 1127.695 kb on - strand, within GFF4214at 1127.695 kb on - strand, within GFF4214at 1127.695 kb on - strand, within GFF4214at 1127.695 kb on - strand, within GFF4214at 1127.695 kb on - strand, within GFF4214at 1127.703 kb on + strand, within GFF4214at 1127.703 kb on + strand, within GFF4214at 1127.703 kb on + strand, within GFF4214at 1127.704 kb on - strand, within GFF4214at 1127.704 kb on - strand, within GFF4214at 1127.766 kb on + strand, within GFF4214at 1127.766 kb on + strand, within GFF4214at 1127.766 kb on + strand, within GFF4214at 1127.767 kb on - strand, within GFF4214at 1127.767 kb on - strand, within GFF4214at 1128.066 kb on + strandat 1128.066 kb on + strandat 1128.066 kb on + strandat 1128.066 kb on + strandat 1128.066 kb on + strandat 1128.066 kb on + strandat 1128.066 kb on + strandat 1128.066 kb on + strandat 1128.067 kb on - strandat 1128.067 kb on - strandat 1128.067 kb on - strandat 1128.067 kb on - strandat 1128.067 kb on - strandat 1128.581 kb on + strandat 1128.581 kb on + strandat 1128.581 kb on + strandat 1128.581 kb on + strandat 1128.581 kb on + strandat 1128.581 kb on + strandat 1128.582 kb on - strandat 1128.582 kb on - strandat 1128.582 kb on - strandat 1128.582 kb on - strandat 1128.608 kb on + strandat 1128.608 kb on + strandat 1128.608 kb on + strandat 1128.609 kb on - strandat 1128.609 kb on - strandat 1128.609 kb on - strandat 1128.615 kb on + strandat 1128.615 kb on + strandat 1128.616 kb on - strandat 1128.637 kb on + strandat 1128.638 kb on - strandat 1128.638 kb on - strandat 1128.638 kb on - strandat 1128.638 kb on - strandat 1128.710 kb on + strand, within GFF4216at 1128.710 kb on + strand, within GFF4216at 1128.710 kb on + strand, within GFF4216at 1128.710 kb on + strand, within GFF4216at 1128.710 kb on + strand, within GFF4216at 1128.710 kb on + strand, within GFF4216at 1128.711 kb on - strand, within GFF4216at 1128.711 kb on - strand, within GFF4216at 1128.711 kb on - strand, within GFF4216at 1128.711 kb on - strand, within GFF4216at 1128.711 kb on - strand, within GFF4216at 1128.738 kb on - strand, within GFF4216at 1128.755 kb on + strand, within GFF4216at 1128.755 kb on + strand, within GFF4216at 1128.755 kb on + strand, within GFF4216at 1128.756 kb on - strand, within GFF4216at 1128.756 kb on - strand, within GFF4216at 1128.756 kb on - strand, within GFF4216at 1128.848 kb on + strand, within GFF4216at 1128.848 kb on + strand, within GFF4216at 1128.848 kb on + strand, within GFF4216at 1128.848 kb on + strand, within GFF4216at 1128.848 kb on + strand, within GFF4216at 1128.848 kb on + strand, within GFF4216at 1128.849 kb on - strand, within GFF4216at 1128.849 kb on - strand, within GFF4216at 1128.849 kb on - strand, within GFF4216

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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1,125,437 + GFF4213 0.24 +1.9
1,125,437 + GFF4213 0.24 +0.3
1,125,468 - GFF4213 0.28 -0.3
1,125,510 - GFF4213 0.35 -1.2
1,125,617 + GFF4213 0.51 +0.5
1,125,617 + GFF4213 0.51 +0.1
1,125,617 + GFF4213 0.51 -0.6
1,125,617 + GFF4213 0.51 +0.7
1,125,617 + GFF4213 0.51 -0.6
1,125,618 - GFF4213 0.51 +0.1
1,125,618 - GFF4213 0.51 -0.5
1,125,618 - GFF4213 0.51 -0.1
1,125,683 + GFF4213 0.61 -0.2
1,125,683 + GFF4213 0.61 -0.6
1,125,683 + GFF4213 0.61 -0.0
1,125,684 - GFF4213 0.62 +0.3
1,125,684 - GFF4213 0.62 +0.6
1,125,726 - GFF4213 0.68 +0.1
1,125,943 + -0.2
1,125,944 - +0.1
1,125,944 - -0.1
1,126,080 + +0.9
1,126,149 + -0.1
1,126,149 + +0.7
1,126,150 - +0.7
1,126,150 - +0.4
1,126,150 - +0.3
1,126,182 + GFF4214 0.10 -1.8
1,126,182 + GFF4214 0.10 -1.4
1,126,182 + GFF4214 0.10 +0.3
1,126,182 + GFF4214 0.10 +0.2
1,126,183 - GFF4214 0.10 -1.0
1,126,183 - GFF4214 0.10 -1.2
1,126,183 - GFF4214 0.10 -0.1
1,126,188 + GFF4214 0.11 +1.2
1,126,188 + GFF4214 0.11 -0.5
1,126,188 + GFF4214 0.11 -0.5
1,126,188 + GFF4214 0.11 -0.3
1,126,188 + GFF4214 0.11 -1.4
1,126,189 - GFF4214 0.11 -0.4
1,126,189 - GFF4214 0.11 -0.5
1,126,189 - GFF4214 0.11 -0.3
1,126,189 - GFF4214 0.11 -0.9
1,126,189 - GFF4214 0.11 -0.0
1,126,191 + GFF4214 0.11 -0.3
1,126,248 + GFF4214 0.14 -0.2
1,126,249 - GFF4214 0.14 -0.9
1,126,399 + GFF4214 0.21 +0.2
1,126,401 + GFF4214 0.21 -0.1
1,126,401 + GFF4214 0.21 -0.4
1,126,402 - GFF4214 0.21 +0.4
1,126,402 - GFF4214 0.21 -1.2
1,126,402 - GFF4214 0.21 -0.1
1,126,806 + GFF4214 0.40 -1.1
1,126,807 - GFF4214 0.40 -0.6
1,126,807 - GFF4214 0.40 -0.6
1,126,858 - GFF4214 0.43 -0.4
1,126,968 + GFF4214 0.48 +0.5
1,126,969 - GFF4214 0.48 -0.4
1,126,999 - GFF4214 0.50 -0.1
1,127,028 + GFF4214 0.51 +0.2
1,127,028 + GFF4214 0.51 -0.3
1,127,029 - GFF4214 0.51 -0.3
1,127,105 - GFF4214 0.55 +0.1
1,127,202 + GFF4214 0.59 -0.5
1,127,202 + GFF4214 0.59 +0.1
1,127,332 - GFF4214 0.66 -0.1
1,127,382 + GFF4214 0.68 +0.3
1,127,382 + GFF4214 0.68 -0.9
1,127,382 + GFF4214 0.68 +0.7
1,127,383 - GFF4214 0.68 +1.6
1,127,694 + GFF4214 0.83 +1.5
1,127,694 + GFF4214 0.83 -0.4
1,127,694 + GFF4214 0.83 -0.1
1,127,694 + GFF4214 0.83 -0.4
1,127,694 + GFF4214 0.83 -0.0
1,127,695 - GFF4214 0.83 +0.4
1,127,695 - GFF4214 0.83 +1.9
1,127,695 - GFF4214 0.83 -0.3
1,127,695 - GFF4214 0.83 -0.6
1,127,695 - GFF4214 0.83 -0.5
1,127,695 - GFF4214 0.83 +0.2
1,127,695 - GFF4214 0.83 +0.4
1,127,703 + GFF4214 0.83 -0.3
1,127,703 + GFF4214 0.83 -1.6
1,127,703 + GFF4214 0.83 -1.1
1,127,704 - GFF4214 0.84 -0.5
1,127,704 - GFF4214 0.84 +0.4
1,127,766 + GFF4214 0.87 -0.1
1,127,766 + GFF4214 0.87 -0.5
1,127,766 + GFF4214 0.87 -0.9
1,127,767 - GFF4214 0.87 -0.3
1,127,767 - GFF4214 0.87 -0.1
1,128,066 + -0.1
1,128,066 + +0.0
1,128,066 + +0.9
1,128,066 + +0.5
1,128,066 + +0.0
1,128,066 + +0.7
1,128,066 + -0.5
1,128,066 + +0.4
1,128,067 - -0.1
1,128,067 - +0.3
1,128,067 - +0.8
1,128,067 - -0.3
1,128,067 - -0.4
1,128,581 + -0.6
1,128,581 + -0.5
1,128,581 + +0.4
1,128,581 + -0.5
1,128,581 + +0.5
1,128,581 + +0.9
1,128,582 - -0.8
1,128,582 - +0.5
1,128,582 - -0.8
1,128,582 - +0.7
1,128,608 + -0.8
1,128,608 + -0.1
1,128,608 + -1.9
1,128,609 - -0.6
1,128,609 - +0.3
1,128,609 - -0.7
1,128,615 + +0.1
1,128,615 + -1.3
1,128,616 - -1.1
1,128,637 + -0.1
1,128,638 - +0.1
1,128,638 - +0.1
1,128,638 - -0.5
1,128,638 - +0.4
1,128,710 + GFF4216 0.11 -1.7
1,128,710 + GFF4216 0.11 -1.5
1,128,710 + GFF4216 0.11 -1.1
1,128,710 + GFF4216 0.11 -0.1
1,128,710 + GFF4216 0.11 -0.1
1,128,710 + GFF4216 0.11 -0.7
1,128,711 - GFF4216 0.11 -0.4
1,128,711 - GFF4216 0.11 -0.3
1,128,711 - GFF4216 0.11 +0.1
1,128,711 - GFF4216 0.11 -0.0
1,128,711 - GFF4216 0.11 -0.3
1,128,738 - GFF4216 0.15 +0.4
1,128,755 + GFF4216 0.17 -0.6
1,128,755 + GFF4216 0.17 -0.6
1,128,755 + GFF4216 0.17 -0.5
1,128,756 - GFF4216 0.17 -0.3
1,128,756 - GFF4216 0.17 -1.6
1,128,756 - GFF4216 0.17 -0.1
1,128,848 + GFF4216 0.31 +0.7
1,128,848 + GFF4216 0.31 -0.2
1,128,848 + GFF4216 0.31 +0.4
1,128,848 + GFF4216 0.31 -0.4
1,128,848 + GFF4216 0.31 -0.9
1,128,848 + GFF4216 0.31 -0.3
1,128,849 - GFF4216 0.31 -0.6
1,128,849 - GFF4216 0.31 -1.3
1,128,849 - GFF4216 0.31 -0.6

Or see this region's nucleotide sequence