Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF391

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
58,183	+		GFF390	0.46	-0.6
58,184	-		GFF390	0.46	+1.4
58,230	+		GFF390	0.50	+0.2
58,230	+		GFF390	0.50	+0.2
58,230	+		GFF390	0.50	-0.3
58,231	-		GFF390	0.50	+0.2
58,231	-		GFF390	0.50	-0.8
58,231	-		GFF390	0.50	+0.0
58,411	+		GFF390	0.66	-0.6
58,411	+		GFF390	0.66	-0.3
58,411	+		GFF390	0.66	-0.5
58,412	-		GFF390	0.66	+1.6
58,412	-		GFF390	0.66	+0.3
58,690	+				-0.2
58,690	+				-0.3
58,690	+				-0.1
58,690	+				-0.6
58,690	+				-1.2
58,690	+				+0.4
58,691	-				+1.0
58,691	-				-0.1
58,691	-				+0.1
58,691	-				+1.0
58,691	-				+0.8
58,691	-				-0.1
58,691	-				+0.8
58,691	-				+0.6
58,691	-				-0.6
58,691	-				+0.3
58,691	-				+0.2
58,873	+				-0.2
58,874	-				-0.6
58,874	-				-0.5
58,927	+				+0.2
58,927	+				-0.2
58,927	+				-0.0
58,939	-				-0.0
58,939	-				-0.2
58,940	+				-0.0
58,948	-				-0.2
59,137	+		GFF391	0.14	-1.0
59,137	+		GFF391	0.14	-0.2
59,137	+		GFF391	0.14	-0.0
59,138	-		GFF391	0.14	-1.2
59,317	+		GFF391	0.28	-0.2
59,318	-		GFF391	0.28	-0.8
59,318	-		GFF391	0.28	+0.4
59,361	+		GFF391	0.32	-0.6
59,362	-		GFF391	0.32	+1.2
59,362	-		GFF391	0.32	+0.5
59,362	-		GFF391	0.32	-0.0
59,362	-		GFF391	0.32	+0.3
59,371	+		GFF391	0.32	+0.3
59,371	+		GFF391	0.32	-0.1
59,371	+		GFF391	0.32	-0.5
59,371	+		GFF391	0.32	-0.5
59,372	-		GFF391	0.33	-0.2
59,372	-		GFF391	0.33	-0.2
59,518	+		GFF391	0.44	-1.0
59,518	+		GFF391	0.44	+0.3
59,518	+		GFF391	0.44	+0.3
59,518	+		GFF391	0.44	+1.1
59,518	+		GFF391	0.44	-0.6
59,518	+		GFF391	0.44	-0.1
59,519	-		GFF391	0.44	-0.6
59,519	-		GFF391	0.44	+0.4
59,519	-		GFF391	0.44	-0.5
59,519	-		GFF391	0.44	+0.8
59,749	+		GFF391	0.62	+0.5
59,750	-		GFF391	0.62	-0.7
59,752	+		GFF391	0.63	-0.1
59,752	+		GFF391	0.63	-0.8
59,752	+		GFF391	0.63	+0.2
59,752	+		GFF391	0.63	-1.3
59,752	+		GFF391	0.63	-0.1
59,752	+		GFF391	0.63	-0.8
59,752	+		GFF391	0.63	+1.3
59,752	+		GFF391	0.63	+0.6
59,752	+		GFF391	0.63	-0.5
59,752	+		GFF391	0.63	-0.0
59,753	-		GFF391	0.63	+0.0
59,753	-		GFF391	0.63	-0.4
59,753	-		GFF391	0.63	-0.7
59,753	-		GFF391	0.63	-1.0
59,753	-		GFF391	0.63	-0.7
59,753	-		GFF391	0.63	-0.1
59,778	+		GFF391	0.65	-0.2
59,778	+		GFF391	0.65	+0.2
59,918	-		GFF391	0.76	+0.1
60,223	+				-0.3
60,223	+				+0.2
60,223	+				+0.2
60,272	-				-0.4
60,277	+				+0.0
60,277	+				-0.2
60,277	+				-0.4
60,277	+				+0.8
60,277	+				+0.3
60,277	+				-0.0
60,277	+				-1.0
60,277	+				+1.2
60,277	+				-0.3
60,277	+				+0.1
60,277	+				-0.5
60,277	+				+0.3
60,277	+				-0.8
60,277	+				-0.1
60,277	+				+0.5
60,278	-				-0.1
60,278	-				-0.1
60,278	-				-0.7
60,278	-				-0.3
60,278	-				-0.3
60,278	-				-1.6
60,278	-				+0.6
60,433	-		GFF392	0.21	-1.5
60,433	-		GFF392	0.21	-0.4
60,433	-		GFF392	0.21	-0.6
60,580	+		GFF392	0.36	+0.3
60,580	+		GFF392	0.36	-1.5
60,580	+		GFF392	0.36	-0.1
60,580	+		GFF392	0.36	-0.5
60,580	+		GFF392	0.36	-0.6
60,580	+		GFF392	0.36	+1.2
60,580	+		GFF392	0.36	+0.5
60,581	-		GFF392	0.36	+0.6
60,581	-		GFF392	0.36	-0.1
60,581	-		GFF392	0.36	-0.6
60,581	-		GFF392	0.36	-0.6
60,904	+		GFF392	0.69	+0.1
60,904	+		GFF392	0.69	-0.1
60,904	+		GFF392	0.69	+0.1
60,904	+		GFF392	0.69	+0.1
60,904	+		GFF392	0.69	-1.1
60,905	-		GFF392	0.69	-0.2
60,905	-		GFF392	0.69	+0.2
60,905	-		GFF392	0.69	-0.5
60,959	+		GFF392	0.75	+0.2
61,090	+		GFF392	0.88	+0.6
61,091	-		GFF392	0.88	-0.1
61,141	+				-1.5
61,141	+				-1.4
61,141	+				-2.1
61,141	+				+0.2