Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3891 and GFF3892 are separated by 170 nucleotides GFF3892 and GFF3893 are separated by 8 nucleotides GFF3893 and GFF3894 are separated by 48 nucleotides GFF3894 and GFF3895 overlap by 4 nucleotides
GFF3891 - L-lactate dehydrogenase (EC 1.1.2.3), at 803,070 to 804,182
GFF3891
GFF3892 - FIG137877: Hypothetical protein in pyoverdin gene cluster, at 804,353 to 804,682
GFF3892
GFF3893 - FIG049111: Hypothetical protein in pyoverdin gene cluster, at 804,691 to 805,290
GFF3893
GFF3894 - Cation ABC transporter, periplasmic cation-binding protein, at 805,339 to 806,277
GFF3894
GFF3895 - ABC transporter in pyoverdin gene cluster, ATP-binding component, at 806,274 to 807,023
GFF3895
Position (kb) 804
805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 803.758 kb on + strand, within GFF3891 at 803.759 kb on - strand, within GFF3891 at 803.920 kb on + strand, within GFF3891 at 803.920 kb on + strand, within GFF3891 at 803.921 kb on - strand, within GFF3891 at 803.921 kb on - strand, within GFF3891 at 804.088 kb on + strand at 804.088 kb on + strand at 804.088 kb on + strand at 804.088 kb on + strand at 804.089 kb on - strand at 804.089 kb on - strand at 804.089 kb on - strand at 804.287 kb on + strand at 804.288 kb on - strand at 804.295 kb on + strand at 804.295 kb on + strand at 804.539 kb on + strand, within GFF3892 at 805.045 kb on + strand, within GFF3893 at 805.045 kb on + strand, within GFF3893 at 805.046 kb on - strand, within GFF3893 at 805.046 kb on - strand, within GFF3893 at 805.046 kb on - strand, within GFF3893 at 805.046 kb on - strand, within GFF3893 at 805.046 kb on - strand, within GFF3893 at 805.253 kb on - strand at 805.480 kb on + strand, within GFF3894 at 805.480 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.484 kb on - strand, within GFF3894 at 805.484 kb on - strand, within GFF3894 at 805.484 kb on - strand, within GFF3894 at 805.484 kb on - strand, within GFF3894 at 805.484 kb on - strand, within GFF3894 at 805.484 kb on - strand, within GFF3894 at 805.489 kb on + strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.561 kb on + strand, within GFF3894 at 805.561 kb on + strand, within GFF3894 at 805.561 kb on + strand, within GFF3894 at 805.561 kb on + strand, within GFF3894 at 805.561 kb on + strand, within GFF3894 at 805.855 kb on + strand, within GFF3894 at 805.855 kb on + strand, within GFF3894 at 805.855 kb on + strand, within GFF3894 at 805.972 kb on + strand, within GFF3894 at 805.978 kb on + strand, within GFF3894 at 806.131 kb on + strand, within GFF3894 at 806.131 kb on + strand, within GFF3894 at 806.132 kb on - strand, within GFF3894 at 806.132 kb on - strand, within GFF3894 at 806.170 kb on + strand, within GFF3894 at 806.171 kb on - strand, within GFF3894 at 806.200 kb on + strand at 806.201 kb on - strand at 806.201 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 803,758 + GFF3891 0.62 -0.7 803,759 - GFF3891 0.62 -0.5 803,920 + GFF3891 0.76 -0.3 803,920 + GFF3891 0.76 -3.0 803,921 - GFF3891 0.76 -0.2 803,921 - GFF3891 0.76 +1.4 804,088 + +0.3 804,088 + -0.5 804,088 + -0.6 804,088 + -0.3 804,089 - +0.1 804,089 - -0.5 804,089 - -0.6 804,287 + -0.4 804,288 - -0.1 804,295 + +0.9 804,295 + +0.5 804,539 + GFF3892 0.56 -2.0 805,045 + GFF3893 0.59 -0.6 805,045 + GFF3893 0.59 -0.7 805,046 - GFF3893 0.59 -0.1 805,046 - GFF3893 0.59 -0.5 805,046 - GFF3893 0.59 +0.4 805,046 - GFF3893 0.59 -0.5 805,046 - GFF3893 0.59 -0.5 805,253 - -0.9 805,480 + GFF3894 0.15 +0.2 805,480 + GFF3894 0.15 -0.3 805,483 + GFF3894 0.15 -0.2 805,483 + GFF3894 0.15 -0.1 805,483 + GFF3894 0.15 -1.1 805,483 + GFF3894 0.15 +0.3 805,483 + GFF3894 0.15 -0.6 805,483 + GFF3894 0.15 +1.9 805,483 + GFF3894 0.15 -0.3 805,484 - GFF3894 0.15 -0.5 805,484 - GFF3894 0.15 -0.2 805,484 - GFF3894 0.15 +0.1 805,484 - GFF3894 0.15 -0.9 805,484 - GFF3894 0.15 -0.4 805,484 - GFF3894 0.15 -0.4 805,489 + GFF3894 0.16 -0.5 805,490 - GFF3894 0.16 +0.9 805,490 - GFF3894 0.16 -1.1 805,490 - GFF3894 0.16 -0.4 805,490 - GFF3894 0.16 +0.1 805,490 - GFF3894 0.16 -0.4 805,490 - GFF3894 0.16 -0.8 805,490 - GFF3894 0.16 +0.7 805,490 - GFF3894 0.16 +0.9 805,490 - GFF3894 0.16 -1.9 805,561 + GFF3894 0.24 -0.3 805,561 + GFF3894 0.24 +0.9 805,561 + GFF3894 0.24 -0.1 805,561 + GFF3894 0.24 +0.1 805,561 + GFF3894 0.24 -0.8 805,855 + GFF3894 0.55 -1.9 805,855 + GFF3894 0.55 -0.2 805,855 + GFF3894 0.55 -0.0 805,972 + GFF3894 0.67 -0.7 805,978 + GFF3894 0.68 -0.0 806,131 + GFF3894 0.84 +0.9 806,131 + GFF3894 0.84 -0.1 806,132 - GFF3894 0.84 +0.5 806,132 - GFF3894 0.84 +0.1 806,170 + GFF3894 0.88 -0.1 806,171 - GFF3894 0.89 +0.1 806,200 + -0.1 806,201 - +0.1 806,201 - -0.5
Or see this region's nucleotide sequence