Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3873 and GFF3874 are separated by 2 nucleotides GFF3874 and GFF3875 overlap by 4 nucleotides GFF3875 and GFF3876 are separated by 11 nucleotides GFF3876 and GFF3877 are separated by 118 nucleotides
GFF3873 - ABC-type transport system involved in resistance to organic solvents, permease component, at 787,039 to 788,178
GFF3873
GFF3874 - L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1), at 788,181 to 788,966
GFF3874
GFF3875 - Paraquat-inducible protein B, at 788,963 to 790,000
GFF3875
GFF3876 - protein of unknown function DUF330, at 790,012 to 790,608
GFF3876
GFF3877 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 790,727 to 792,559
GFF3877
Position (kb) 788
789
790
791 Strain fitness (log2 ratio) -1
0
1 at 788.015 kb on - strand, within GFF3873 at 788.015 kb on - strand, within GFF3873 at 788.015 kb on - strand, within GFF3873 at 788.400 kb on + strand, within GFF3874 at 788.400 kb on + strand, within GFF3874 at 788.400 kb on + strand, within GFF3874 at 789.059 kb on + strand at 789.059 kb on + strand at 789.060 kb on - strand at 789.060 kb on - strand at 789.060 kb on - strand at 789.089 kb on + strand, within GFF3875 at 789.089 kb on + strand, within GFF3875 at 789.089 kb on + strand, within GFF3875 at 789.089 kb on + strand, within GFF3875 at 789.182 kb on + strand, within GFF3875 at 789.183 kb on - strand, within GFF3875 at 789.183 kb on - strand, within GFF3875 at 789.365 kb on + strand, within GFF3875 at 789.365 kb on + strand, within GFF3875 at 789.365 kb on + strand, within GFF3875 at 789.366 kb on - strand, within GFF3875 at 789.366 kb on - strand, within GFF3875 at 790.687 kb on - strand at 790.979 kb on + strand, within GFF3877 at 790.979 kb on + strand, within GFF3877 at 790.979 kb on + strand, within GFF3877 at 790.979 kb on + strand, within GFF3877 at 790.979 kb on + strand, within GFF3877 at 790.979 kb on + strand, within GFF3877 at 790.980 kb on - strand, within GFF3877
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 788,015 - GFF3873 0.86 +0.2 788,015 - GFF3873 0.86 +0.2 788,015 - GFF3873 0.86 +0.3 788,400 + GFF3874 0.28 +0.4 788,400 + GFF3874 0.28 +0.1 788,400 + GFF3874 0.28 +0.8 789,059 + +0.3 789,059 + +0.3 789,060 - +0.2 789,060 - -0.2 789,060 - -1.4 789,089 + GFF3875 0.12 -1.2 789,089 + GFF3875 0.12 +0.5 789,089 + GFF3875 0.12 +0.5 789,089 + GFF3875 0.12 -0.2 789,182 + GFF3875 0.21 +0.4 789,183 - GFF3875 0.21 -1.4 789,183 - GFF3875 0.21 +0.9 789,365 + GFF3875 0.39 +0.1 789,365 + GFF3875 0.39 +0.7 789,365 + GFF3875 0.39 +0.3 789,366 - GFF3875 0.39 -0.2 789,366 - GFF3875 0.39 -0.2 790,687 - -0.1 790,979 + GFF3877 0.14 +0.3 790,979 + GFF3877 0.14 -0.0 790,979 + GFF3877 0.14 +0.9 790,979 + GFF3877 0.14 +0.7 790,979 + GFF3877 0.14 -1.3 790,979 + GFF3877 0.14 +0.2 790,980 - GFF3877 0.14 -0.2
Or see this region's nucleotide sequence