Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3862 and GFF3863 are separated by 0 nucleotides GFF3863 and GFF3864 overlap by 4 nucleotides GFF3864 and GFF3865 are separated by 4 nucleotides
GFF3862 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 774,109 to 775,098
GFF3862
GFF3863 - TRAP-type C4-dicarboxylate transport system, small permease component, at 775,099 to 775,614
GFF3863
GFF3864 - TRAP-type C4-dicarboxylate transport system, large permease component, at 775,611 to 776,912
GFF3864
GFF3865 - Salicylate hydroxylase (EC 1.14.13.1), at 776,917 to 778,068
GFF3865
Position (kb) 775
776
777 Strain fitness (log2 ratio) -1
0
1 at 774.703 kb on + strand, within GFF3862 at 774.704 kb on - strand, within GFF3862 at 774.820 kb on + strand, within GFF3862 at 774.821 kb on - strand, within GFF3862 at 774.985 kb on + strand, within GFF3862 at 774.985 kb on + strand, within GFF3862 at 775.030 kb on + strand at 775.201 kb on + strand, within GFF3863 at 775.202 kb on - strand, within GFF3863 at 775.423 kb on + strand, within GFF3863 at 775.423 kb on + strand, within GFF3863 at 775.456 kb on + strand, within GFF3863 at 775.456 kb on + strand, within GFF3863 at 775.457 kb on - strand, within GFF3863 at 775.457 kb on - strand, within GFF3863 at 775.492 kb on + strand, within GFF3863 at 775.492 kb on + strand, within GFF3863 at 775.492 kb on + strand, within GFF3863 at 775.493 kb on - strand, within GFF3863 at 775.493 kb on - strand, within GFF3863 at 775.493 kb on - strand, within GFF3863 at 775.493 kb on - strand, within GFF3863 at 775.713 kb on + strand at 775.713 kb on + strand at 775.714 kb on - strand at 775.714 kb on - strand at 775.719 kb on + strand at 775.719 kb on + strand at 775.720 kb on - strand at 775.720 kb on - strand at 775.773 kb on + strand, within GFF3864 at 775.773 kb on + strand, within GFF3864 at 775.774 kb on - strand, within GFF3864 at 775.910 kb on + strand, within GFF3864 at 776.100 kb on + strand, within GFF3864 at 776.100 kb on + strand, within GFF3864 at 776.101 kb on - strand, within GFF3864 at 776.197 kb on - strand, within GFF3864 at 776.197 kb on - strand, within GFF3864 at 776.197 kb on - strand, within GFF3864 at 776.197 kb on - strand, within GFF3864 at 776.316 kb on + strand, within GFF3864 at 776.391 kb on + strand, within GFF3864 at 776.392 kb on - strand, within GFF3864 at 776.493 kb on + strand, within GFF3864 at 776.493 kb on + strand, within GFF3864 at 776.745 kb on + strand, within GFF3864 at 776.945 kb on + strand at 776.946 kb on - strand at 777.278 kb on + strand, within GFF3865 at 777.278 kb on + strand, within GFF3865 at 777.422 kb on + strand, within GFF3865 at 777.542 kb on + strand, within GFF3865 at 777.682 kb on + strand, within GFF3865 at 777.682 kb on + strand, within GFF3865 at 777.682 kb on + strand, within GFF3865 at 777.682 kb on + strand, within GFF3865 at 777.803 kb on + strand, within GFF3865 at 777.803 kb on + strand, within GFF3865 at 777.803 kb on + strand, within GFF3865 at 777.804 kb on - strand, within GFF3865 at 777.804 kb on - strand, within GFF3865 at 777.842 kb on + strand, within GFF3865 at 777.842 kb on + strand, within GFF3865 at 777.842 kb on + strand, within GFF3865
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 774,703 + GFF3862 0.60 +0.6 774,704 - GFF3862 0.60 +0.1 774,820 + GFF3862 0.72 -0.3 774,821 - GFF3862 0.72 -0.1 774,985 + GFF3862 0.88 +0.1 774,985 + GFF3862 0.88 -0.2 775,030 + +0.1 775,201 + GFF3863 0.20 +1.2 775,202 - GFF3863 0.20 -0.3 775,423 + GFF3863 0.63 -1.1 775,423 + GFF3863 0.63 +0.0 775,456 + GFF3863 0.69 +0.0 775,456 + GFF3863 0.69 -0.1 775,457 - GFF3863 0.69 +0.7 775,457 - GFF3863 0.69 +0.3 775,492 + GFF3863 0.76 -0.4 775,492 + GFF3863 0.76 -1.1 775,492 + GFF3863 0.76 +0.9 775,493 - GFF3863 0.76 -0.3 775,493 - GFF3863 0.76 +0.8 775,493 - GFF3863 0.76 -0.8 775,493 - GFF3863 0.76 +0.0 775,713 + -1.1 775,713 + -0.6 775,714 - -0.3 775,714 - +0.2 775,719 + +0.6 775,719 + -1.1 775,720 - -0.3 775,720 - +0.3 775,773 + GFF3864 0.12 -0.5 775,773 + GFF3864 0.12 +0.2 775,774 - GFF3864 0.13 -0.6 775,910 + GFF3864 0.23 -0.1 776,100 + GFF3864 0.38 +0.4 776,100 + GFF3864 0.38 -0.1 776,101 - GFF3864 0.38 -0.1 776,197 - GFF3864 0.45 -0.2 776,197 - GFF3864 0.45 -0.6 776,197 - GFF3864 0.45 +0.2 776,197 - GFF3864 0.45 +1.1 776,316 + GFF3864 0.54 +0.1 776,391 + GFF3864 0.60 -0.4 776,392 - GFF3864 0.60 -0.2 776,493 + GFF3864 0.68 -1.4 776,493 + GFF3864 0.68 +0.5 776,745 + GFF3864 0.87 -0.6 776,945 + +0.5 776,946 - -0.8 777,278 + GFF3865 0.31 -0.2 777,278 + GFF3865 0.31 +0.3 777,422 + GFF3865 0.44 +0.5 777,542 + GFF3865 0.54 +0.7 777,682 + GFF3865 0.66 -0.1 777,682 + GFF3865 0.66 +0.9 777,682 + GFF3865 0.66 +0.5 777,682 + GFF3865 0.66 +0.4 777,803 + GFF3865 0.77 -0.6 777,803 + GFF3865 0.77 -0.6 777,803 + GFF3865 0.77 +0.4 777,804 - GFF3865 0.77 +0.8 777,804 - GFF3865 0.77 +0.1 777,842 + GFF3865 0.80 -0.8 777,842 + GFF3865 0.80 +0.5 777,842 + GFF3865 0.80 +0.3
Or see this region's nucleotide sequence