Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3757 and GFF3758 are separated by 13 nucleotides GFF3758 and GFF3759 are separated by 78 nucleotides GFF3759 and GFF3760 overlap by 4 nucleotides GFF3760 and GFF3761 are separated by 116 nucleotides
GFF3757 - Inner membrane component of tripartite multidrug resistance system, at 651,515 to 653,044
GFF3757
GFF3758 - SAM-dependent methyltransferases, at 653,058 to 653,720
GFF3758
GFF3759 - PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene, at 653,799 to 654,143
GFF3759
GFF3760 - Glutathione S-transferase (EC 2.5.1.18), at 654,140 to 654,745
GFF3760
GFF3761 - Transcriptional regulator, DeoR family, at 654,862 to 655,836
GFF3761
Position (kb) 653
654
655 Strain fitness (log2 ratio) -1
0
1
2 at 652.922 kb on + strand at 653.023 kb on - strand at 653.089 kb on + strand at 653.090 kb on - strand at 653.090 kb on - strand at 653.090 kb on - strand at 653.090 kb on - strand at 653.272 kb on + strand, within GFF3758 at 653.273 kb on - strand, within GFF3758 at 653.360 kb on - strand, within GFF3758 at 653.360 kb on - strand, within GFF3758 at 653.635 kb on + strand, within GFF3758 at 653.635 kb on + strand, within GFF3758 at 653.636 kb on - strand, within GFF3758 at 653.752 kb on - strand at 653.874 kb on + strand, within GFF3759 at 653.875 kb on - strand, within GFF3759 at 653.875 kb on - strand, within GFF3759 at 654.023 kb on - strand, within GFF3759 at 654.141 kb on + strand at 654.142 kb on - strand at 654.228 kb on + strand, within GFF3760 at 654.229 kb on - strand, within GFF3760 at 654.237 kb on + strand, within GFF3760 at 654.238 kb on - strand, within GFF3760 at 654.277 kb on - strand, within GFF3760 at 654.426 kb on + strand, within GFF3760 at 654.427 kb on - strand, within GFF3760 at 654.427 kb on - strand, within GFF3760 at 654.427 kb on - strand, within GFF3760 at 654.436 kb on - strand, within GFF3760 at 654.436 kb on - strand, within GFF3760 at 654.436 kb on - strand, within GFF3760 at 654.436 kb on - strand, within GFF3760 at 654.613 kb on - strand, within GFF3760 at 654.727 kb on - strand at 655.042 kb on + strand, within GFF3761
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 652,922 + +0.4 653,023 - -0.5 653,089 + +0.2 653,090 - -0.9 653,090 - +0.3 653,090 - +0.2 653,090 - +0.9 653,272 + GFF3758 0.32 +0.9 653,273 - GFF3758 0.32 -0.0 653,360 - GFF3758 0.46 +0.8 653,360 - GFF3758 0.46 -0.0 653,635 + GFF3758 0.87 +0.0 653,635 + GFF3758 0.87 +0.0 653,636 - GFF3758 0.87 -0.1 653,752 - +0.4 653,874 + GFF3759 0.22 +0.9 653,875 - GFF3759 0.22 +0.2 653,875 - GFF3759 0.22 +0.6 654,023 - GFF3759 0.65 -1.4 654,141 + +0.9 654,142 - -0.8 654,228 + GFF3760 0.15 -0.6 654,229 - GFF3760 0.15 +0.3 654,237 + GFF3760 0.16 +2.0 654,238 - GFF3760 0.16 -0.1 654,277 - GFF3760 0.23 +0.6 654,426 + GFF3760 0.47 -0.0 654,427 - GFF3760 0.47 +0.2 654,427 - GFF3760 0.47 +1.0 654,427 - GFF3760 0.47 +0.4 654,436 - GFF3760 0.49 +0.0 654,436 - GFF3760 0.49 -0.9 654,436 - GFF3760 0.49 -0.0 654,436 - GFF3760 0.49 -0.0 654,613 - GFF3760 0.78 +0.3 654,727 - -0.9 655,042 + GFF3761 0.18 +0.5
Or see this region's nucleotide sequence