Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3705

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3704 and GFF3705 are separated by 184 nucleotidesGFF3705 and GFF3706 are separated by 18 nucleotidesGFF3706 and GFF3707 are separated by 43 nucleotides GFF3704 - Transglutaminase-like, at 597,290 to 598,171 GFF3704 GFF3705 - Glyoxalase family protein, at 598,356 to 599,330 GFF3705 GFF3706 - hypothetical protein, at 599,349 to 599,573 GFF3706 GFF3707 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 599,617 to 600,645 GFF3707 Position (kb) 598 599 600Strain fitness (log2 ratio) -1 0 1 2at 597.602 kb on + strand, within GFF3704at 597.602 kb on + strand, within GFF3704at 597.602 kb on + strand, within GFF3704at 597.602 kb on + strand, within GFF3704at 597.603 kb on - strand, within GFF3704at 597.603 kb on - strand, within GFF3704at 597.603 kb on - strand, within GFF3704at 597.608 kb on + strand, within GFF3704at 597.609 kb on - strand, within GFF3704at 597.609 kb on - strand, within GFF3704at 597.609 kb on - strand, within GFF3704at 597.609 kb on - strand, within GFF3704at 597.620 kb on + strand, within GFF3704at 597.917 kb on + strand, within GFF3704at 597.917 kb on + strand, within GFF3704at 597.917 kb on + strand, within GFF3704at 597.918 kb on - strand, within GFF3704at 597.918 kb on - strand, within GFF3704at 597.918 kb on - strand, within GFF3704at 597.918 kb on - strand, within GFF3704at 597.918 kb on - strand, within GFF3704at 597.918 kb on - strand, within GFF3704at 597.918 kb on - strand, within GFF3704at 597.918 kb on - strand, within GFF3704at 597.929 kb on + strand, within GFF3704at 597.929 kb on + strand, within GFF3704at 597.929 kb on + strand, within GFF3704at 597.930 kb on - strand, within GFF3704at 597.930 kb on - strand, within GFF3704at 597.930 kb on - strand, within GFF3704at 597.930 kb on - strand, within GFF3704at 597.947 kb on + strand, within GFF3704at 597.948 kb on - strand, within GFF3704at 598.218 kb on - strandat 598.231 kb on - strandat 598.268 kb on + strandat 598.269 kb on - strandat 598.363 kb on + strandat 598.364 kb on - strandat 598.364 kb on - strandat 598.386 kb on + strandat 598.386 kb on + strandat 598.386 kb on + strandat 598.386 kb on + strandat 598.386 kb on + strandat 598.387 kb on - strandat 598.605 kb on + strand, within GFF3705at 598.606 kb on - strand, within GFF3705at 598.606 kb on - strand, within GFF3705at 598.786 kb on - strand, within GFF3705at 598.860 kb on + strand, within GFF3705at 598.860 kb on + strand, within GFF3705at 598.861 kb on - strand, within GFF3705at 598.861 kb on - strand, within GFF3705at 598.861 kb on - strand, within GFF3705at 598.861 kb on - strand, within GFF3705at 598.861 kb on - strand, within GFF3705at 598.897 kb on - strand, within GFF3705at 599.148 kb on + strand, within GFF3705at 599.149 kb on - strand, within GFF3705at 599.149 kb on - strand, within GFF3705at 599.151 kb on + strand, within GFF3705at 599.151 kb on + strand, within GFF3705at 599.151 kb on + strand, within GFF3705at 599.151 kb on + strand, within GFF3705at 599.152 kb on - strand, within GFF3705at 599.367 kb on + strandat 599.368 kb on - strandat 599.409 kb on + strand, within GFF3706at 599.410 kb on - strand, within GFF3706at 599.410 kb on - strand, within GFF3706at 599.484 kb on + strand, within GFF3706at 599.485 kb on - strand, within GFF3706at 599.622 kb on + strandat 599.623 kb on - strandat 599.623 kb on - strandat 600.001 kb on + strand, within GFF3707at 600.091 kb on + strand, within GFF3707at 600.091 kb on + strand, within GFF3707at 600.092 kb on - strand, within GFF3707at 600.118 kb on + strand, within GFF3707at 600.119 kb on - strand, within GFF3707at 600.157 kb on + strand, within GFF3707at 600.158 kb on - strand, within GFF3707

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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597,602 + GFF3704 0.35 +1.2
597,602 + GFF3704 0.35 -0.0
597,602 + GFF3704 0.35 +0.9
597,602 + GFF3704 0.35 -1.4
597,603 - GFF3704 0.35 -0.1
597,603 - GFF3704 0.35 +0.3
597,603 - GFF3704 0.35 +0.3
597,608 + GFF3704 0.36 +0.1
597,609 - GFF3704 0.36 +0.2
597,609 - GFF3704 0.36 -0.5
597,609 - GFF3704 0.36 -1.4
597,609 - GFF3704 0.36 +1.1
597,620 + GFF3704 0.37 -0.2
597,917 + GFF3704 0.71 -0.1
597,917 + GFF3704 0.71 -0.1
597,917 + GFF3704 0.71 +0.1
597,918 - GFF3704 0.71 +0.4
597,918 - GFF3704 0.71 +0.1
597,918 - GFF3704 0.71 +0.4
597,918 - GFF3704 0.71 -0.1
597,918 - GFF3704 0.71 +0.3
597,918 - GFF3704 0.71 +0.1
597,918 - GFF3704 0.71 +0.5
597,918 - GFF3704 0.71 -0.2
597,929 + GFF3704 0.72 -0.1
597,929 + GFF3704 0.72 -1.0
597,929 + GFF3704 0.72 +1.1
597,930 - GFF3704 0.73 +0.6
597,930 - GFF3704 0.73 +0.6
597,930 - GFF3704 0.73 -0.4
597,930 - GFF3704 0.73 +1.9
597,947 + GFF3704 0.74 +1.1
597,948 - GFF3704 0.75 -0.4
598,218 - +0.4
598,231 - +0.1
598,268 + +0.1
598,269 - +0.6
598,363 + -0.2
598,364 - -0.3
598,364 - -0.2
598,386 + -0.1
598,386 + -0.4
598,386 + +0.2
598,386 + -0.1
598,386 + -0.3
598,387 - -0.0
598,605 + GFF3705 0.26 +0.2
598,606 - GFF3705 0.26 +0.1
598,606 - GFF3705 0.26 -0.1
598,786 - GFF3705 0.44 -0.2
598,860 + GFF3705 0.52 -0.5
598,860 + GFF3705 0.52 +0.4
598,861 - GFF3705 0.52 -0.4
598,861 - GFF3705 0.52 +0.1
598,861 - GFF3705 0.52 -0.1
598,861 - GFF3705 0.52 -0.6
598,861 - GFF3705 0.52 -0.3
598,897 - GFF3705 0.55 -0.4
599,148 + GFF3705 0.81 -0.5
599,149 - GFF3705 0.81 +0.7
599,149 - GFF3705 0.81 -0.2
599,151 + GFF3705 0.82 -1.6
599,151 + GFF3705 0.82 -0.4
599,151 + GFF3705 0.82 -0.4
599,151 + GFF3705 0.82 -0.4
599,152 - GFF3705 0.82 +0.6
599,367 + +0.7
599,368 - -1.4
599,409 + GFF3706 0.27 +0.9
599,410 - GFF3706 0.27 -0.9
599,410 - GFF3706 0.27 +0.5
599,484 + GFF3706 0.60 -1.4
599,485 - GFF3706 0.60 +0.5
599,622 + +1.4
599,623 - +0.9
599,623 - -0.4
600,001 + GFF3707 0.37 -0.0
600,091 + GFF3707 0.46 -0.2
600,091 + GFF3707 0.46 +0.4
600,092 - GFF3707 0.46 +2.5
600,118 + GFF3707 0.49 -0.2
600,119 - GFF3707 0.49 +0.0
600,157 + GFF3707 0.52 +0.1
600,158 - GFF3707 0.53 +0.2

Or see this region's nucleotide sequence