Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3672 and GFF3673 are separated by 140 nucleotides GFF3673 and GFF3674 are separated by 113 nucleotides
GFF3672 - Response regulator NasT, at 561,091 to 562,389
GFF3672
GFF3673 - TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 562,530 to 563,636
GFF3673
GFF3674 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 563,750 to 565,054
GFF3674
Position (kb) 562
563
564 Strain fitness (log2 ratio) -1
0
1
2 at 561.983 kb on + strand, within GFF3672 at 561.983 kb on + strand, within GFF3672 at 561.983 kb on + strand, within GFF3672 at 561.983 kb on + strand, within GFF3672 at 561.983 kb on + strand, within GFF3672 at 561.983 kb on + strand, within GFF3672 at 561.983 kb on + strand, within GFF3672 at 561.984 kb on - strand, within GFF3672 at 561.984 kb on - strand, within GFF3672 at 561.984 kb on - strand, within GFF3672 at 562.071 kb on - strand, within GFF3672 at 562.143 kb on + strand, within GFF3672 at 562.143 kb on + strand, within GFF3672 at 562.144 kb on - strand, within GFF3672 at 562.518 kb on + strand at 562.519 kb on - strand at 563.660 kb on - strand at 564.188 kb on + strand, within GFF3674 at 564.188 kb on + strand, within GFF3674 at 564.188 kb on + strand, within GFF3674 at 564.189 kb on - strand, within GFF3674 at 564.189 kb on - strand, within GFF3674 at 564.320 kb on + strand, within GFF3674 at 564.321 kb on - strand, within GFF3674 at 564.321 kb on - strand, within GFF3674 at 564.321 kb on - strand, within GFF3674 at 564.321 kb on - strand, within GFF3674 at 564.321 kb on - strand, within GFF3674 at 564.338 kb on + strand, within GFF3674 at 564.339 kb on - strand, within GFF3674 at 564.339 kb on - strand, within GFF3674 at 564.458 kb on + strand, within GFF3674 at 564.572 kb on + strand, within GFF3674 at 564.572 kb on + strand, within GFF3674 at 564.573 kb on - strand, within GFF3674 at 564.573 kb on - strand, within GFF3674 at 564.573 kb on - strand, within GFF3674
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 561,983 + GFF3672 0.69 -0.7 561,983 + GFF3672 0.69 +0.0 561,983 + GFF3672 0.69 -1.4 561,983 + GFF3672 0.69 -1.2 561,983 + GFF3672 0.69 +0.4 561,983 + GFF3672 0.69 +0.3 561,983 + GFF3672 0.69 -0.1 561,984 - GFF3672 0.69 +0.5 561,984 - GFF3672 0.69 -0.1 561,984 - GFF3672 0.69 -0.6 562,071 - GFF3672 0.75 +0.2 562,143 + GFF3672 0.81 +0.5 562,143 + GFF3672 0.81 -0.7 562,144 - GFF3672 0.81 -0.6 562,518 + -0.2 562,519 - -0.1 563,660 - -0.8 564,188 + GFF3674 0.34 +0.3 564,188 + GFF3674 0.34 +2.3 564,188 + GFF3674 0.34 +0.6 564,189 - GFF3674 0.34 +1.2 564,189 - GFF3674 0.34 +0.3 564,320 + GFF3674 0.44 -1.1 564,321 - GFF3674 0.44 +1.6 564,321 - GFF3674 0.44 -0.4 564,321 - GFF3674 0.44 -0.5 564,321 - GFF3674 0.44 -0.7 564,321 - GFF3674 0.44 +0.1 564,338 + GFF3674 0.45 -1.0 564,339 - GFF3674 0.45 -0.3 564,339 - GFF3674 0.45 -1.2 564,458 + GFF3674 0.54 +1.3 564,572 + GFF3674 0.63 -0.4 564,572 + GFF3674 0.63 +0.1 564,573 - GFF3674 0.63 -0.8 564,573 - GFF3674 0.63 -0.0 564,573 - GFF3674 0.63 -0.2
Or see this region's nucleotide sequence