Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3540

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
430,440	+		GFF3539	0.55	-1.3
430,552	+		GFF3539	0.63	+0.5
430,552	+		GFF3539	0.63	+0.1
430,553	-		GFF3539	0.63	-1.0
430,553	-		GFF3539	0.63	-0.4
430,553	-		GFF3539	0.63	-0.7
430,589	-		GFF3539	0.65	-0.3
430,711	+		GFF3539	0.74	-0.1
430,711	+		GFF3539	0.74	+0.9
430,712	-		GFF3539	0.74	-0.2
430,771	+		GFF3539	0.78	-0.7
430,771	+		GFF3539	0.78	+0.9
430,771	+		GFF3539	0.78	-0.8
430,904	-		GFF3539	0.88	+0.3
430,904	-		GFF3539	0.88	+0.8
430,904	-		GFF3539	0.88	-0.4
431,192	+				+0.3
431,192	+				+0.2
433,335	+		GFF3542	0.38	+0.8
433,335	+		GFF3542	0.38	-0.8
433,336	-		GFF3542	0.38	-0.4