Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3487 and GFF3488 are separated by 156 nucleotides GFF3488 and GFF3489 are separated by 155 nucleotides GFF3489 and GFF3490 are separated by 312 nucleotides GFF3490 and GFF3491 are separated by 58 nucleotides
GFF3487 - hypothetical protein, at 367,607 to 368,242
GFF3487
GFF3488 - hypothetical protein, at 368,399 to 368,578
GFF3488
GFF3489 - Probable lipoprotein, at 368,734 to 369,087
GFF3489
GFF3490 - Predicted transcriptional regulators, at 369,400 to 369,690
GFF3490
GFF3491 - y4eB gene in pNGR234a homolog, at 369,749 to 370,060
GFF3491
Position (kb) 368
369
370 Strain fitness (log2 ratio) -1
0
1 at 367.892 kb on - strand, within GFF3487 at 368.326 kb on - strand at 368.371 kb on - strand at 368.489 kb on + strand, within GFF3488 at 368.633 kb on - strand at 368.633 kb on - strand at 368.633 kb on - strand at 368.774 kb on + strand, within GFF3489 at 368.825 kb on - strand, within GFF3489 at 369.091 kb on - strand at 369.091 kb on - strand at 369.091 kb on - strand at 369.091 kb on - strand at 369.091 kb on - strand at 369.091 kb on - strand at 369.269 kb on - strand at 369.287 kb on + strand at 369.287 kb on + strand at 369.288 kb on - strand at 369.292 kb on - strand at 369.292 kb on - strand at 369.292 kb on - strand at 369.819 kb on + strand, within GFF3491 at 369.820 kb on - strand, within GFF3491 at 369.820 kb on - strand, within GFF3491 at 369.858 kb on + strand, within GFF3491 at 369.865 kb on - strand, within GFF3491 at 369.865 kb on - strand, within GFF3491 at 369.912 kb on + strand, within GFF3491 at 369.912 kb on + strand, within GFF3491
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 367,892 - GFF3487 0.45 +0.6 368,326 - -0.6 368,371 - -1.3 368,489 + GFF3488 0.50 +0.4 368,633 - -0.2 368,633 - -0.6 368,633 - +0.5 368,774 + GFF3489 0.11 -0.1 368,825 - GFF3489 0.26 +0.3 369,091 - -0.4 369,091 - -0.4 369,091 - +0.6 369,091 - -0.1 369,091 - -0.3 369,091 - +0.1 369,269 - -0.4 369,287 + +0.8 369,287 + +0.1 369,288 - +0.6 369,292 - +0.0 369,292 - +0.3 369,292 - -0.5 369,819 + GFF3491 0.22 +0.2 369,820 - GFF3491 0.23 -0.1 369,820 - GFF3491 0.23 -0.4 369,858 + GFF3491 0.35 +0.6 369,865 - GFF3491 0.37 -0.9 369,865 - GFF3491 0.37 -0.8 369,912 + GFF3491 0.52 +0.1 369,912 + GFF3491 0.52 +0.1
Or see this region's nucleotide sequence