Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3419

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3417 and GFF3418 overlap by 4 nucleotidesGFF3418 and GFF3419 overlap by 1 nucleotidesGFF3419 and GFF3420 overlap by 4 nucleotides GFF3417 - Ferredoxin, at 302,427 to 302,732 GFF3417 GFF3418 - Methyltransferase (EC 2.1.1.-), at 302,729 to 303,658 GFF3418 GFF3419 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 303,658 to 304,599 GFF3419 GFF3420 - Acetylornithine aminotransferase (EC 2.6.1.11), at 304,596 to 305,795 GFF3420 Position (kb) 303 304 305Strain fitness (log2 ratio) -1 0 1at 302.763 kb on + strandat 302.967 kb on + strand, within GFF3418at 302.967 kb on + strand, within GFF3418at 302.968 kb on - strand, within GFF3418at 303.030 kb on + strand, within GFF3418at 303.217 kb on - strand, within GFF3418at 305.182 kb on + strand, within GFF3420at 305.183 kb on - strand, within GFF3420at 305.183 kb on - strand, within GFF3420at 305.444 kb on - strand, within GFF3420at 305.567 kb on - strand, within GFF3420at 305.567 kb on - strand, within GFF3420at 305.567 kb on - strand, within GFF3420at 305.567 kb on - strand, within GFF3420at 305.569 kb on + strand, within GFF3420at 305.570 kb on - strand, within GFF3420at 305.570 kb on - strand, within GFF3420at 305.570 kb on - strand, within GFF3420at 305.570 kb on - strand, within GFF3420

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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302,763 + +0.3
302,967 + GFF3418 0.26 +0.6
302,967 + GFF3418 0.26 +0.4
302,968 - GFF3418 0.26 -0.9
303,030 + GFF3418 0.32 +0.3
303,217 - GFF3418 0.52 -0.1
305,182 + GFF3420 0.49 -0.6
305,183 - GFF3420 0.49 -0.5
305,183 - GFF3420 0.49 +0.4
305,444 - GFF3420 0.71 -0.4
305,567 - GFF3420 0.81 -1.6
305,567 - GFF3420 0.81 -1.4
305,567 - GFF3420 0.81 +0.9
305,567 - GFF3420 0.81 -0.5
305,569 + GFF3420 0.81 -0.6
305,570 - GFF3420 0.81 -0.9
305,570 - GFF3420 0.81 -1.1
305,570 - GFF3420 0.81 -0.4
305,570 - GFF3420 0.81 -1.4

Or see this region's nucleotide sequence