Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3375 and GFF3376 are separated by 22 nucleotides GFF3376 and GFF3377 are separated by 77 nucleotides GFF3377 and GFF3378 are separated by 12 nucleotides GFF3378 and GFF3379 are separated by 125 nucleotides
GFF3375 - Rhodanese-related sulfurtransferases, at 261,249 to 261,779
GFF3375
GFF3376 - Transcriptional regulator, ArsR family, at 261,802 to 262,110
GFF3376
GFF3377 - SoxH protein, homolog, at 262,188 to 263,057
GFF3377
GFF3378 - transcriptional regulator, XRE family, at 263,070 to 263,885
GFF3378
GFF3379 - putative integral membrane protein, at 264,011 to 264,424
GFF3379
Position (kb) 262
263
264 Strain fitness (log2 ratio) -1
0
1 at 261.523 kb on + strand, within GFF3375 at 261.523 kb on + strand, within GFF3375 at 261.523 kb on + strand, within GFF3375 at 261.523 kb on + strand, within GFF3375 at 261.524 kb on - strand, within GFF3375 at 261.866 kb on + strand, within GFF3376 at 262.120 kb on - strand at 262.150 kb on - strand at 262.245 kb on + strand at 262.246 kb on - strand at 262.246 kb on - strand at 262.246 kb on - strand at 262.246 kb on - strand at 262.246 kb on - strand at 262.266 kb on - strand at 262.645 kb on - strand, within GFF3377 at 262.696 kb on - strand, within GFF3377 at 262.696 kb on - strand, within GFF3377 at 262.743 kb on + strand, within GFF3377 at 262.806 kb on + strand, within GFF3377 at 262.806 kb on + strand, within GFF3377 at 263.635 kb on + strand, within GFF3378 at 263.635 kb on + strand, within GFF3378 at 263.648 kb on - strand, within GFF3378 at 263.755 kb on + strand, within GFF3378 at 263.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 261,523 + GFF3375 0.52 +0.6 261,523 + GFF3375 0.52 -0.1 261,523 + GFF3375 0.52 -0.7 261,523 + GFF3375 0.52 -0.5 261,524 - GFF3375 0.52 -0.3 261,866 + GFF3376 0.21 +0.5 262,120 - -0.3 262,150 - +0.0 262,245 + +0.1 262,246 - +0.5 262,246 - -0.1 262,246 - -0.8 262,246 - -0.2 262,246 - -0.5 262,266 - +0.9 262,645 - GFF3377 0.53 -0.4 262,696 - GFF3377 0.58 +1.5 262,696 - GFF3377 0.58 -0.2 262,743 + GFF3377 0.64 +0.9 262,806 + GFF3377 0.71 -0.1 262,806 + GFF3377 0.71 +0.2 263,635 + GFF3378 0.69 -0.4 263,635 + GFF3378 0.69 -1.1 263,648 - GFF3378 0.71 -0.3 263,755 + GFF3378 0.84 -0.1 263,889 - +0.1
Or see this region's nucleotide sequence