Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3344 and GFF3345 are separated by 31 nucleotides GFF3345 and GFF3346 are separated by 43 nucleotides GFF3346 and GFF3347 are separated by 3 nucleotides
GFF3344 - Signal peptidase I (EC 3.4.21.89), at 230,004 to 230,981
GFF3344
GFF3345 - PROBABLE TRANSMEMBRANE PROTEIN, at 231,013 to 231,360
GFF3345
GFF3346 - Ribonuclease III (EC 3.1.26.3), at 231,404 to 232,141
GFF3346
GFF3347 - GTP-binding protein Era, at 232,145 to 233,179
GFF3347
Position (kb) 231
232 Strain fitness (log2 ratio) -2
-1
0
1
2 at 231.082 kb on + strand, within GFF3345 at 231.082 kb on + strand, within GFF3345 at 231.083 kb on - strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.118 kb on + strand, within GFF3345 at 231.119 kb on - strand, within GFF3345 at 231.119 kb on - strand, within GFF3345 at 231.119 kb on - strand, within GFF3345 at 231.119 kb on - strand, within GFF3345 at 231.119 kb on - strand, within GFF3345 at 231.127 kb on + strand, within GFF3345 at 231.128 kb on - strand, within GFF3345 at 231.292 kb on + strand, within GFF3345 at 231.340 kb on + strand at 231.340 kb on + strand at 231.340 kb on + strand at 231.341 kb on - strand at 231.341 kb on - strand at 231.341 kb on - strand at 231.341 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 231,082 + GFF3345 0.20 -0.1 231,082 + GFF3345 0.20 -0.9 231,083 - GFF3345 0.20 -1.8 231,118 + GFF3345 0.30 -1.5 231,118 + GFF3345 0.30 -1.0 231,118 + GFF3345 0.30 -0.7 231,118 + GFF3345 0.30 -2.7 231,118 + GFF3345 0.30 -0.7 231,118 + GFF3345 0.30 -0.6 231,118 + GFF3345 0.30 +1.2 231,118 + GFF3345 0.30 -1.3 231,118 + GFF3345 0.30 -1.1 231,118 + GFF3345 0.30 -0.9 231,118 + GFF3345 0.30 -0.5 231,118 + GFF3345 0.30 -0.8 231,118 + GFF3345 0.30 -0.1 231,118 + GFF3345 0.30 -0.8 231,118 + GFF3345 0.30 -0.8 231,119 - GFF3345 0.30 -1.1 231,119 - GFF3345 0.30 -1.2 231,119 - GFF3345 0.30 -0.6 231,119 - GFF3345 0.30 -1.7 231,119 - GFF3345 0.30 -1.6 231,127 + GFF3345 0.33 -2.0 231,128 - GFF3345 0.33 -1.0 231,292 + GFF3345 0.80 -0.7 231,340 + +0.4 231,340 + -1.4 231,340 + +0.2 231,341 - +1.9 231,341 - +0.3 231,341 - +0.1 231,341 - -0.3
Or see this region's nucleotide sequence