Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3057 and GFF3058 are separated by 108 nucleotides GFF3058 and GFF3059 overlap by 4 nucleotides GFF3059 and GFF3060 are separated by 14 nucleotides
GFF3057 - Tricarboxylate transport protein TctC, at 136,587 to 137,555
GFF3057
GFF3058 - LysR family transcriptional regulator YbhD, at 137,664 to 138,581
GFF3058
GFF3059 - 5-aminopentanamidase (EC 3.5.1.30), at 138,578 to 139,363
GFF3059
GFF3060 - Lysine 2-monooxygenase (EC 1.13.12.2), at 139,378 to 141,066
GFF3060
Position (kb) 137
138
139 Strain fitness (log2 ratio) -1
0
1 at 137.012 kb on - strand, within GFF3057 at 137.281 kb on + strand, within GFF3057 at 137.282 kb on - strand, within GFF3057 at 137.405 kb on - strand, within GFF3057 at 137.461 kb on + strand at 137.462 kb on - strand at 137.483 kb on - strand at 137.609 kb on - strand at 137.857 kb on + strand, within GFF3058 at 137.858 kb on - strand, within GFF3058 at 138.117 kb on + strand, within GFF3058 at 138.118 kb on - strand, within GFF3058 at 138.118 kb on - strand, within GFF3058 at 138.118 kb on - strand, within GFF3058 at 138.579 kb on + strand at 138.579 kb on + strand at 138.580 kb on - strand at 138.729 kb on + strand, within GFF3059 at 138.729 kb on + strand, within GFF3059 at 138.730 kb on - strand, within GFF3059 at 138.730 kb on - strand, within GFF3059 at 138.765 kb on + strand, within GFF3059 at 138.765 kb on + strand, within GFF3059 at 138.915 kb on + strand, within GFF3059 at 138.916 kb on - strand, within GFF3059 at 139.027 kb on - strand, within GFF3059 at 139.027 kb on - strand, within GFF3059 at 139.110 kb on + strand, within GFF3059 at 139.110 kb on + strand, within GFF3059 at 139.379 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 137,012 - GFF3057 0.44 +0.1 137,281 + GFF3057 0.72 -0.7 137,282 - GFF3057 0.72 +0.4 137,405 - GFF3057 0.84 +1.1 137,461 + +0.5 137,462 - +0.2 137,483 - +0.3 137,609 - +0.4 137,857 + GFF3058 0.21 -0.7 137,858 - GFF3058 0.21 -0.7 138,117 + GFF3058 0.49 -0.6 138,118 - GFF3058 0.49 +0.5 138,118 - GFF3058 0.49 -0.1 138,118 - GFF3058 0.49 -0.7 138,579 + +0.6 138,579 + +0.4 138,580 - -0.1 138,729 + GFF3059 0.19 +0.2 138,729 + GFF3059 0.19 -1.7 138,730 - GFF3059 0.19 -0.5 138,730 - GFF3059 0.19 +0.3 138,765 + GFF3059 0.24 -0.3 138,765 + GFF3059 0.24 -0.2 138,915 + GFF3059 0.43 -1.0 138,916 - GFF3059 0.43 +0.2 139,027 - GFF3059 0.57 -0.2 139,027 - GFF3059 0.57 -0.1 139,110 + GFF3059 0.68 +0.8 139,110 + GFF3059 0.68 -0.1 139,379 + -0.1
Or see this region's nucleotide sequence