Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3021

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3019 and GFF3020 are separated by 382 nucleotidesGFF3020 and GFF3021 are separated by 4 nucleotidesGFF3021 and GFF3022 are separated by 4 nucleotidesGFF3022 and GFF3023 are separated by 1 nucleotides GFF3019 - FIG022199: FAD-binding protein, at 96,264 to 97,601 GFF3019 GFF3020 - hypothetical protein, at 97,984 to 98,100 GFF3020 GFF3021 - Alkanesulfonates transport system permease protein, at 98,105 to 98,932 GFF3021 GFF3022 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 98,937 to 99,749 GFF3022 GFF3023 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 99,751 to 100,776 GFF3023 Position (kb) 98 99Strain fitness (log2 ratio) -2 -1 0 1 2 3at 97.276 kb on + strand, within GFF3019at 97.277 kb on - strand, within GFF3019at 97.277 kb on - strand, within GFF3019at 97.282 kb on + strand, within GFF3019at 97.282 kb on + strand, within GFF3019at 97.283 kb on - strand, within GFF3019at 97.283 kb on - strand, within GFF3019at 97.283 kb on - strand, within GFF3019at 97.638 kb on + strandat 97.638 kb on + strandat 97.638 kb on + strandat 97.639 kb on - strandat 97.653 kb on - strandat 97.681 kb on + strandat 97.681 kb on + strandat 97.681 kb on + strandat 97.681 kb on + strandat 97.682 kb on - strandat 97.792 kb on + strandat 97.792 kb on + strandat 97.792 kb on + strandat 97.793 kb on - strandat 97.793 kb on - strandat 97.793 kb on - strandat 97.793 kb on - strandat 97.793 kb on - strandat 97.869 kb on + strandat 97.869 kb on + strandat 97.869 kb on + strandat 97.927 kb on + strandat 97.927 kb on + strandat 97.927 kb on + strandat 97.928 kb on - strandat 97.928 kb on - strandat 97.928 kb on - strandat 97.928 kb on - strandat 97.980 kb on + strandat 97.980 kb on + strandat 97.980 kb on + strandat 97.980 kb on + strandat 97.981 kb on - strandat 97.989 kb on + strandat 97.989 kb on + strandat 97.989 kb on + strandat 97.990 kb on - strandat 98.266 kb on - strand, within GFF3021at 98.266 kb on - strand, within GFF3021at 98.266 kb on - strand, within GFF3021at 98.292 kb on + strand, within GFF3021at 98.292 kb on + strand, within GFF3021at 98.292 kb on + strand, within GFF3021at 98.293 kb on - strand, within GFF3021at 98.293 kb on - strand, within GFF3021at 98.339 kb on + strand, within GFF3021at 98.339 kb on + strand, within GFF3021at 98.340 kb on - strand, within GFF3021at 98.376 kb on + strand, within GFF3021at 98.376 kb on + strand, within GFF3021at 98.376 kb on + strand, within GFF3021at 98.376 kb on + strand, within GFF3021at 98.376 kb on + strand, within GFF3021at 98.377 kb on - strand, within GFF3021at 98.377 kb on - strand, within GFF3021at 98.377 kb on - strand, within GFF3021at 98.463 kb on + strand, within GFF3021at 98.464 kb on + strand, within GFF3021at 98.464 kb on - strand, within GFF3021at 98.464 kb on - strand, within GFF3021at 98.464 kb on - strand, within GFF3021at 98.464 kb on - strand, within GFF3021at 98.464 kb on - strand, within GFF3021at 98.595 kb on + strand, within GFF3021at 98.595 kb on + strand, within GFF3021at 98.718 kb on + strand, within GFF3021at 98.719 kb on - strand, within GFF3021at 98.719 kb on - strand, within GFF3021at 98.719 kb on - strand, within GFF3021at 98.719 kb on - strand, within GFF3021at 98.719 kb on - strand, within GFF3021at 98.719 kb on - strand, within GFF3021at 98.963 kb on - strandat 99.496 kb on + strand, within GFF3022at 99.496 kb on + strand, within GFF3022at 99.496 kb on + strand, within GFF3022at 99.496 kb on + strand, within GFF3022at 99.497 kb on - strand, within GFF3022at 99.497 kb on - strand, within GFF3022at 99.497 kb on - strand, within GFF3022at 99.497 kb on - strand, within GFF3022at 99.497 kb on - strand, within GFF3022at 99.676 kb on + strandat 99.676 kb on + strandat 99.801 kb on - strandat 99.801 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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97,276 + GFF3019 0.76 -0.9
97,277 - GFF3019 0.76 +0.2
97,277 - GFF3019 0.76 -0.1
97,282 + GFF3019 0.76 -0.5
97,282 + GFF3019 0.76 -0.1
97,283 - GFF3019 0.76 +2.2
97,283 - GFF3019 0.76 -0.5
97,283 - GFF3019 0.76 +0.4
97,638 + +0.4
97,638 + -0.2
97,638 + -0.4
97,639 - -0.2
97,653 - -0.1
97,681 + -0.7
97,681 + -0.2
97,681 + -0.2
97,681 + -0.1
97,682 - -0.3
97,792 + +0.7
97,792 + +0.3
97,792 + +0.8
97,793 - -0.5
97,793 - +0.1
97,793 - +1.1
97,793 - +1.1
97,793 - +0.1
97,869 + -0.2
97,869 + +1.1
97,869 + -0.4
97,927 + -0.3
97,927 + +1.4
97,927 + -0.3
97,928 - -0.4
97,928 - -0.2
97,928 - -0.4
97,928 - -0.3
97,980 + -0.1
97,980 + +0.3
97,980 + +3.4
97,980 + +0.7
97,981 - -0.3
97,989 + -0.2
97,989 + -0.2
97,989 + -2.2
97,990 - +0.9
98,266 - GFF3021 0.19 +0.4
98,266 - GFF3021 0.19 +0.3
98,266 - GFF3021 0.19 -0.1
98,292 + GFF3021 0.23 +0.3
98,292 + GFF3021 0.23 +0.5
98,292 + GFF3021 0.23 -0.2
98,293 - GFF3021 0.23 +0.5
98,293 - GFF3021 0.23 -0.1
98,339 + GFF3021 0.28 +0.2
98,339 + GFF3021 0.28 -0.1
98,340 - GFF3021 0.28 -1.1
98,376 + GFF3021 0.33 +1.3
98,376 + GFF3021 0.33 -0.4
98,376 + GFF3021 0.33 -0.1
98,376 + GFF3021 0.33 +0.9
98,376 + GFF3021 0.33 +0.1
98,377 - GFF3021 0.33 -0.4
98,377 - GFF3021 0.33 +0.3
98,377 - GFF3021 0.33 +0.5
98,463 + GFF3021 0.43 +1.1
98,464 + GFF3021 0.43 +0.1
98,464 - GFF3021 0.43 +0.2
98,464 - GFF3021 0.43 -0.2
98,464 - GFF3021 0.43 +0.0
98,464 - GFF3021 0.43 +0.3
98,464 - GFF3021 0.43 -0.9
98,595 + GFF3021 0.59 +0.0
98,595 + GFF3021 0.59 -0.1
98,718 + GFF3021 0.74 +0.8
98,719 - GFF3021 0.74 +0.1
98,719 - GFF3021 0.74 -1.3
98,719 - GFF3021 0.74 +0.1
98,719 - GFF3021 0.74 +0.0
98,719 - GFF3021 0.74 -0.3
98,719 - GFF3021 0.74 -0.3
98,963 - -0.5
99,496 + GFF3022 0.69 +0.2
99,496 + GFF3022 0.69 -0.5
99,496 + GFF3022 0.69 +0.6
99,496 + GFF3022 0.69 -0.3
99,497 - GFF3022 0.69 +0.1
99,497 - GFF3022 0.69 +1.0
99,497 - GFF3022 0.69 +0.9
99,497 - GFF3022 0.69 +0.4
99,497 - GFF3022 0.69 -0.1
99,676 + -0.5
99,676 + +1.3
99,801 - -0.5
99,801 - -0.6

Or see this region's nucleotide sequence