Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2935 and GFF2936 are separated by 85 nucleotides GFF2936 and GFF2937 are separated by 19 nucleotides GFF2937 and GFF2938 are separated by 150 nucleotides GFF2938 and GFF2939 are separated by 26 nucleotides
GFF2935 - Octanoate-[acyl-carrier-protein]-protein-N-octan oyltransferase, at 18,373 to 19,065
GFF2935
GFF2936 - Proposed lipoate regulatory protein YbeD, at 19,151 to 19,435
GFF2936
GFF2937 - D-alanine aminotransferase (EC 2.6.1.21), at 19,455 to 20,339
GFF2937
GFF2938 - ATP synthase protein I, at 20,490 to 20,996
GFF2938
GFF2939 - ATP synthase F0 sector subunit a, at 21,023 to 21,889
GFF2939
Position (kb) 19
20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 19.251 kb on + strand, within GFF2936 at 19.251 kb on + strand, within GFF2936 at 19.251 kb on + strand, within GFF2936 at 19.252 kb on - strand, within GFF2936 at 19.390 kb on - strand, within GFF2936 at 19.460 kb on + strand at 19.487 kb on - strand at 19.495 kb on + strand at 19.495 kb on + strand at 19.495 kb on + strand at 19.496 kb on - strand at 19.496 kb on - strand at 19.507 kb on + strand at 19.508 kb on - strand at 19.508 kb on - strand at 19.654 kb on + strand, within GFF2937 at 19.655 kb on - strand, within GFF2937 at 19.655 kb on - strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.050 kb on + strand, within GFF2937 at 20.051 kb on - strand, within GFF2937 at 20.051 kb on - strand, within GFF2937 at 20.051 kb on - strand, within GFF2937 at 20.051 kb on - strand, within GFF2937 at 20.212 kb on + strand, within GFF2937 at 20.213 kb on - strand, within GFF2937 at 20.213 kb on - strand, within GFF2937 at 20.213 kb on - strand, within GFF2937 at 20.213 kb on - strand, within GFF2937 at 20.213 kb on - strand, within GFF2937 at 20.213 kb on - strand, within GFF2937 at 20.230 kb on + strand, within GFF2937 at 20.231 kb on - strand, within GFF2937 at 20.296 kb on + strand at 20.296 kb on + strand at 20.296 kb on + strand at 20.296 kb on + strand at 20.297 kb on - strand at 20.297 kb on - strand at 20.297 kb on - strand at 20.297 kb on - strand at 20.297 kb on - strand at 20.297 kb on - strand at 20.348 kb on + strand at 20.402 kb on - strand at 20.424 kb on + strand at 20.424 kb on + strand at 20.424 kb on + strand at 20.424 kb on + strand at 20.424 kb on + strand at 20.424 kb on + strand at 20.425 kb on - strand at 20.425 kb on - strand at 20.425 kb on - strand at 20.425 kb on - strand at 20.425 kb on - strand at 20.425 kb on - strand at 20.425 kb on - strand at 20.428 kb on + strand at 20.428 kb on + strand at 20.428 kb on + strand at 20.428 kb on + strand at 20.428 kb on + strand at 20.429 kb on - strand at 20.429 kb on - strand at 20.429 kb on - strand at 20.429 kb on - strand at 20.429 kb on - strand at 20.946 kb on + strand at 20.946 kb on + strand at 20.946 kb on + strand at 20.958 kb on + strand at 20.958 kb on + strand at 20.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 19,251 + GFF2936 0.35 -2.1 19,251 + GFF2936 0.35 -3.8 19,251 + GFF2936 0.35 -2.1 19,252 - GFF2936 0.35 -1.7 19,390 - GFF2936 0.84 -1.7 19,460 + -0.1 19,487 - -0.4 19,495 + +0.5 19,495 + -0.1 19,495 + -0.9 19,496 - -1.3 19,496 - -0.7 19,507 + -0.2 19,508 - -0.2 19,508 - +0.3 19,654 + GFF2937 0.22 +0.6 19,655 - GFF2937 0.23 +0.6 19,655 - GFF2937 0.23 -0.3 20,050 + GFF2937 0.67 -0.4 20,050 + GFF2937 0.67 -0.2 20,050 + GFF2937 0.67 +0.7 20,050 + GFF2937 0.67 +0.1 20,050 + GFF2937 0.67 +0.7 20,050 + GFF2937 0.67 +0.1 20,050 + GFF2937 0.67 +0.8 20,050 + GFF2937 0.67 +0.1 20,050 + GFF2937 0.67 -0.8 20,050 + GFF2937 0.67 +0.4 20,050 + GFF2937 0.67 -0.1 20,050 + GFF2937 0.67 +0.5 20,050 + GFF2937 0.67 -0.8 20,050 + GFF2937 0.67 +1.1 20,051 - GFF2937 0.67 -0.0 20,051 - GFF2937 0.67 +0.8 20,051 - GFF2937 0.67 +2.3 20,051 - GFF2937 0.67 -0.9 20,212 + GFF2937 0.86 +0.7 20,213 - GFF2937 0.86 -0.1 20,213 - GFF2937 0.86 -0.0 20,213 - GFF2937 0.86 +0.6 20,213 - GFF2937 0.86 +0.8 20,213 - GFF2937 0.86 -0.5 20,213 - GFF2937 0.86 +2.1 20,230 + GFF2937 0.88 +1.1 20,231 - GFF2937 0.88 +0.4 20,296 + -0.0 20,296 + -0.1 20,296 + +0.1 20,296 + -0.4 20,297 - -2.2 20,297 - +0.7 20,297 - -0.6 20,297 - -0.4 20,297 - +0.5 20,297 - -0.0 20,348 + -0.4 20,402 - +1.1 20,424 + -0.5 20,424 + +0.1 20,424 + -0.6 20,424 + +0.8 20,424 + -0.4 20,424 + -0.5 20,425 - +0.2 20,425 - -1.7 20,425 - -0.1 20,425 - -0.9 20,425 - -0.2 20,425 - -0.4 20,425 - -0.3 20,428 + -0.2 20,428 + +0.0 20,428 + +0.2 20,428 + +0.4 20,428 + +0.2 20,429 - +0.3 20,429 - +2.9 20,429 - +0.1 20,429 - -0.1 20,429 - +0.2 20,946 + +0.1 20,946 + -1.7 20,946 + -3.3 20,958 + +0.1 20,958 + -1.9 20,959 - -3.4
Or see this region's nucleotide sequence