Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2932

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2931 and GFF2932 overlap by 4 nucleotidesGFF2932 and GFF2933 are separated by 103 nucleotidesGFF2933 and GFF2934 are separated by 1 nucleotides GFF2931 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 13,829 to 15,583 GFF2931 GFF2932 - putative membrane protein, at 15,580 to 16,533 GFF2932 GFF2933 - Transcriptional regulator, AraC family, at 16,637 to 17,326 GFF2933 GFF2934 - Lipoate synthase, at 17,328 to 18,344 GFF2934 Position (kb) 15 16 17Strain fitness (log2 ratio) -2 -1 0 1at 14.594 kb on + strand, within GFF2931at 14.822 kb on + strand, within GFF2931at 14.822 kb on + strand, within GFF2931at 14.822 kb on + strand, within GFF2931at 14.823 kb on - strand, within GFF2931at 14.823 kb on - strand, within GFF2931at 14.831 kb on + strand, within GFF2931at 15.150 kb on - strand, within GFF2931at 15.263 kb on + strand, within GFF2931at 15.264 kb on - strand, within GFF2931at 15.264 kb on - strand, within GFF2931at 15.264 kb on - strand, within GFF2931at 15.264 kb on - strand, within GFF2931at 15.308 kb on + strand, within GFF2931at 15.308 kb on + strand, within GFF2931at 15.308 kb on + strand, within GFF2931at 15.308 kb on + strand, within GFF2931at 15.309 kb on - strand, within GFF2931at 15.309 kb on - strand, within GFF2931at 15.581 kb on + strandat 15.581 kb on + strandat 15.581 kb on + strandat 15.581 kb on + strandat 15.581 kb on + strandat 15.582 kb on - strandat 15.582 kb on - strandat 15.582 kb on - strandat 15.582 kb on - strandat 15.582 kb on - strandat 15.582 kb on - strandat 15.673 kb on + strandat 15.673 kb on + strandat 15.674 kb on - strandat 15.674 kb on - strandat 15.674 kb on - strandat 15.707 kb on + strand, within GFF2932at 15.708 kb on - strand, within GFF2932at 15.708 kb on - strand, within GFF2932at 15.708 kb on - strand, within GFF2932at 16.007 kb on + strand, within GFF2932at 16.007 kb on + strand, within GFF2932at 16.008 kb on - strand, within GFF2932at 16.008 kb on - strand, within GFF2932at 16.008 kb on - strand, within GFF2932at 16.008 kb on - strand, within GFF2932at 16.008 kb on - strand, within GFF2932at 16.008 kb on - strand, within GFF2932at 16.008 kb on - strand, within GFF2932at 16.008 kb on - strand, within GFF2932at 16.274 kb on + strand, within GFF2932at 16.274 kb on + strand, within GFF2932at 16.274 kb on + strand, within GFF2932at 16.274 kb on + strand, within GFF2932at 16.274 kb on + strand, within GFF2932at 16.274 kb on + strand, within GFF2932at 16.274 kb on + strand, within GFF2932at 16.274 kb on + strand, within GFF2932at 16.274 kb on + strand, within GFF2932at 16.274 kb on + strand, within GFF2932at 16.274 kb on + strand, within GFF2932at 16.274 kb on + strand, within GFF2932at 16.275 kb on - strand, within GFF2932at 16.275 kb on - strand, within GFF2932at 16.275 kb on - strand, within GFF2932at 16.275 kb on - strand, within GFF2932at 16.275 kb on - strand, within GFF2932at 16.275 kb on - strand, within GFF2932at 16.275 kb on - strand, within GFF2932at 16.275 kb on - strand, within GFF2932at 16.275 kb on - strand, within GFF2932at 16.277 kb on + strand, within GFF2932at 16.277 kb on + strand, within GFF2932at 16.277 kb on + strand, within GFF2932at 16.277 kb on + strand, within GFF2932at 16.277 kb on + strand, within GFF2932at 16.277 kb on + strand, within GFF2932at 16.277 kb on + strand, within GFF2932at 16.277 kb on + strand, within GFF2932at 16.277 kb on + strand, within GFF2932at 16.277 kb on + strand, within GFF2932at 16.278 kb on - strand, within GFF2932at 16.278 kb on - strand, within GFF2932at 16.278 kb on - strand, within GFF2932at 16.278 kb on - strand, within GFF2932at 16.278 kb on - strand, within GFF2932at 16.278 kb on - strand, within GFF2932at 16.391 kb on + strand, within GFF2932at 16.392 kb on - strand, within GFF2932at 16.392 kb on - strand, within GFF2932at 16.392 kb on - strand, within GFF2932at 16.401 kb on - strand, within GFF2932at 16.401 kb on - strand, within GFF2932at 16.574 kb on + strandat 16.574 kb on + strandat 16.575 kb on - strandat 16.575 kb on - strandat 16.693 kb on - strandat 17.037 kb on + strand, within GFF2933at 17.037 kb on + strand, within GFF2933at 17.037 kb on + strand, within GFF2933at 17.037 kb on + strand, within GFF2933at 17.037 kb on + strand, within GFF2933at 17.037 kb on + strand, within GFF2933at 17.038 kb on - strand, within GFF2933at 17.038 kb on - strand, within GFF2933at 17.038 kb on - strand, within GFF2933at 17.289 kb on + strandat 17.289 kb on + strandat 17.289 kb on + strandat 17.290 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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14,594 + GFF2931 0.44 -1.7
14,822 + GFF2931 0.57 -0.4
14,822 + GFF2931 0.57 -0.8
14,822 + GFF2931 0.57 -2.5
14,823 - GFF2931 0.57 -1.2
14,823 - GFF2931 0.57 -1.1
14,831 + GFF2931 0.57 -1.8
15,150 - GFF2931 0.75 -1.4
15,263 + GFF2931 0.82 -1.6
15,264 - GFF2931 0.82 -0.9
15,264 - GFF2931 0.82 -1.8
15,264 - GFF2931 0.82 -1.7
15,264 - GFF2931 0.82 -1.8
15,308 + GFF2931 0.84 -2.5
15,308 + GFF2931 0.84 -1.4
15,308 + GFF2931 0.84 -1.5
15,308 + GFF2931 0.84 +0.6
15,309 - GFF2931 0.84 -0.7
15,309 - GFF2931 0.84 -2.3
15,581 + -0.4
15,581 + -0.1
15,581 + -0.8
15,581 + -0.5
15,581 + -0.9
15,582 - -1.3
15,582 - +0.9
15,582 - +0.6
15,582 - -0.1
15,582 - -1.4
15,582 - -1.2
15,673 + +1.3
15,673 + +1.1
15,674 - +0.2
15,674 - +0.6
15,674 - +0.3
15,707 + GFF2932 0.13 +1.7
15,708 - GFF2932 0.13 -1.0
15,708 - GFF2932 0.13 -0.0
15,708 - GFF2932 0.13 -0.6
16,007 + GFF2932 0.45 +0.2
16,007 + GFF2932 0.45 -1.3
16,008 - GFF2932 0.45 -0.5
16,008 - GFF2932 0.45 +0.4
16,008 - GFF2932 0.45 -0.4
16,008 - GFF2932 0.45 +0.5
16,008 - GFF2932 0.45 -1.9
16,008 - GFF2932 0.45 -0.9
16,008 - GFF2932 0.45 -0.3
16,008 - GFF2932 0.45 -0.2
16,274 + GFF2932 0.73 -0.2
16,274 + GFF2932 0.73 +0.0
16,274 + GFF2932 0.73 +0.3
16,274 + GFF2932 0.73 -0.6
16,274 + GFF2932 0.73 +0.1
16,274 + GFF2932 0.73 +0.3
16,274 + GFF2932 0.73 +0.2
16,274 + GFF2932 0.73 +0.6
16,274 + GFF2932 0.73 -0.7
16,274 + GFF2932 0.73 +0.5
16,274 + GFF2932 0.73 -0.4
16,274 + GFF2932 0.73 -0.1
16,275 - GFF2932 0.73 -0.4
16,275 - GFF2932 0.73 -0.0
16,275 - GFF2932 0.73 +0.5
16,275 - GFF2932 0.73 +0.1
16,275 - GFF2932 0.73 -0.6
16,275 - GFF2932 0.73 -1.3
16,275 - GFF2932 0.73 -2.5
16,275 - GFF2932 0.73 +0.1
16,275 - GFF2932 0.73 +0.6
16,277 + GFF2932 0.73 +0.1
16,277 + GFF2932 0.73 +0.1
16,277 + GFF2932 0.73 +0.4
16,277 + GFF2932 0.73 -0.0
16,277 + GFF2932 0.73 +0.7
16,277 + GFF2932 0.73 -0.8
16,277 + GFF2932 0.73 -0.3
16,277 + GFF2932 0.73 +0.8
16,277 + GFF2932 0.73 +0.3
16,277 + GFF2932 0.73 -1.3
16,278 - GFF2932 0.73 -1.4
16,278 - GFF2932 0.73 +0.1
16,278 - GFF2932 0.73 +0.0
16,278 - GFF2932 0.73 -0.7
16,278 - GFF2932 0.73 +0.7
16,278 - GFF2932 0.73 -0.2
16,391 + GFF2932 0.85 -0.4
16,392 - GFF2932 0.85 +0.5
16,392 - GFF2932 0.85 -1.5
16,392 - GFF2932 0.85 +0.3
16,401 - GFF2932 0.86 -0.0
16,401 - GFF2932 0.86 -0.3
16,574 + -1.1
16,574 + -0.0
16,575 - -0.8
16,575 - -1.7
16,693 - +0.1
17,037 + GFF2933 0.58 -0.0
17,037 + GFF2933 0.58 -0.3
17,037 + GFF2933 0.58 +0.1
17,037 + GFF2933 0.58 -0.4
17,037 + GFF2933 0.58 +0.1
17,037 + GFF2933 0.58 -0.4
17,038 - GFF2933 0.58 +0.2
17,038 - GFF2933 0.58 -0.4
17,038 - GFF2933 0.58 +0.6
17,289 + +0.4
17,289 + +0.6
17,289 + -0.7
17,290 - -0.4

Or see this region's nucleotide sequence