Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2811 and GFF2812 overlap by 8 nucleotides GFF2812 and GFF2813 are separated by 10 nucleotides GFF2813 and GFF2814 are separated by 92 nucleotides
GFF2811 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 410,290 to 411,183
GFF2811
GFF2812 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 411,176 to 411,988
GFF2812
GFF2813 - FIG00761799: membrane protein, at 411,999 to 412,307
GFF2813
GFF2814 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 412,400 to 414,133
GFF2814
Position (kb) 411
412
413 Strain fitness (log2 ratio) -2
-1
0
1
2 at 411.094 kb on + strand at 411.095 kb on - strand at 411.130 kb on + strand at 411.131 kb on - strand at 411.131 kb on - strand at 411.131 kb on - strand at 411.181 kb on + strand at 411.181 kb on + strand at 411.182 kb on - strand at 411.222 kb on - strand at 411.248 kb on + strand at 411.249 kb on - strand at 411.249 kb on - strand at 411.335 kb on + strand, within GFF2812 at 411.374 kb on + strand, within GFF2812 at 411.374 kb on + strand, within GFF2812 at 411.392 kb on + strand, within GFF2812 at 411.392 kb on + strand, within GFF2812 at 411.392 kb on + strand, within GFF2812 at 411.392 kb on + strand, within GFF2812 at 411.392 kb on + strand, within GFF2812 at 411.393 kb on - strand, within GFF2812 at 411.551 kb on + strand, within GFF2812 at 411.551 kb on + strand, within GFF2812 at 411.552 kb on - strand, within GFF2812 at 411.552 kb on - strand, within GFF2812 at 411.552 kb on - strand, within GFF2812 at 411.780 kb on + strand, within GFF2812 at 411.954 kb on - strand at 411.954 kb on - strand at 411.954 kb on - strand at 412.176 kb on + strand, within GFF2813 at 412.177 kb on - strand, within GFF2813 at 412.684 kb on + strand, within GFF2814 at 412.684 kb on + strand, within GFF2814 at 412.684 kb on + strand, within GFF2814 at 412.685 kb on - strand, within GFF2814 at 412.763 kb on + strand, within GFF2814 at 412.763 kb on + strand, within GFF2814 at 412.764 kb on - strand, within GFF2814 at 412.805 kb on + strand, within GFF2814 at 412.806 kb on - strand, within GFF2814 at 412.838 kb on + strand, within GFF2814 at 412.839 kb on - strand, within GFF2814 at 412.839 kb on - strand, within GFF2814 at 412.839 kb on - strand, within GFF2814 at 412.862 kb on + strand, within GFF2814 at 412.862 kb on + strand, within GFF2814 at 412.863 kb on - strand, within GFF2814 at 412.863 kb on - strand, within GFF2814 at 412.934 kb on + strand, within GFF2814 at 412.968 kb on - strand, within GFF2814 at 413.027 kb on + strand, within GFF2814 at 413.028 kb on - strand, within GFF2814 at 413.028 kb on - strand, within GFF2814 at 413.028 kb on - strand, within GFF2814 at 413.028 kb on - strand, within GFF2814 at 413.028 kb on - strand, within GFF2814 at 413.033 kb on + strand, within GFF2814 at 413.034 kb on - strand, within GFF2814 at 413.121 kb on + strand, within GFF2814 at 413.126 kb on + strand, within GFF2814 at 413.126 kb on + strand, within GFF2814 at 413.127 kb on - strand, within GFF2814 at 413.127 kb on - strand, within GFF2814
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 411,094 + +0.1 411,095 - -0.5 411,130 + +1.1 411,131 - -0.3 411,131 - +2.1 411,131 - -0.9 411,181 + +0.4 411,181 + +1.1 411,182 - +0.5 411,222 - +0.1 411,248 + +0.2 411,249 - +0.1 411,249 - -0.1 411,335 + GFF2812 0.20 -2.6 411,374 + GFF2812 0.24 -0.0 411,374 + GFF2812 0.24 -0.1 411,392 + GFF2812 0.27 -0.5 411,392 + GFF2812 0.27 +0.6 411,392 + GFF2812 0.27 -0.3 411,392 + GFF2812 0.27 +0.4 411,392 + GFF2812 0.27 -1.0 411,393 - GFF2812 0.27 +0.2 411,551 + GFF2812 0.46 +0.2 411,551 + GFF2812 0.46 +0.5 411,552 - GFF2812 0.46 -0.5 411,552 - GFF2812 0.46 -0.3 411,552 - GFF2812 0.46 +0.6 411,780 + GFF2812 0.74 -0.4 411,954 - -1.3 411,954 - +0.9 411,954 - +0.1 412,176 + GFF2813 0.57 +0.2 412,177 - GFF2813 0.58 -0.8 412,684 + GFF2814 0.16 +0.6 412,684 + GFF2814 0.16 -0.1 412,684 + GFF2814 0.16 +0.6 412,685 - GFF2814 0.16 +0.3 412,763 + GFF2814 0.21 +0.1 412,763 + GFF2814 0.21 -0.0 412,764 - GFF2814 0.21 -0.3 412,805 + GFF2814 0.23 -0.5 412,806 - GFF2814 0.23 -0.6 412,838 + GFF2814 0.25 +0.3 412,839 - GFF2814 0.25 -0.4 412,839 - GFF2814 0.25 -1.8 412,839 - GFF2814 0.25 +0.1 412,862 + GFF2814 0.27 -0.0 412,862 + GFF2814 0.27 +0.2 412,863 - GFF2814 0.27 -1.1 412,863 - GFF2814 0.27 +0.8 412,934 + GFF2814 0.31 +1.1 412,968 - GFF2814 0.33 -0.6 413,027 + GFF2814 0.36 -0.2 413,028 - GFF2814 0.36 +0.3 413,028 - GFF2814 0.36 -0.5 413,028 - GFF2814 0.36 +0.8 413,028 - GFF2814 0.36 +0.6 413,028 - GFF2814 0.36 +1.6 413,033 + GFF2814 0.37 -1.9 413,034 - GFF2814 0.37 -0.2 413,121 + GFF2814 0.42 -1.5 413,126 + GFF2814 0.42 +0.2 413,126 + GFF2814 0.42 +0.2 413,127 - GFF2814 0.42 +0.9 413,127 - GFF2814 0.42 +0.8
Or see this region's nucleotide sequence