Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2780

Experiment: Ying_AminoAcid20 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2778 and GFF2779 are separated by 32 nucleotidesGFF2779 and GFF2780 overlap by 4 nucleotidesGFF2780 and GFF2781 are separated by 226 nucleotidesGFF2781 and GFF2782 are separated by 13 nucleotides GFF2778 - Bacitracin transport permease protein BCRC, at 378,460 to 379,032 GFF2778 GFF2779 - hypothetical protein, at 379,065 to 379,832 GFF2779 GFF2780 - Pyruvate kinase (EC 2.7.1.40), at 379,829 to 381,262 GFF2780 GFF2781 - hypothetical protein, at 381,489 to 381,653 GFF2781 GFF2782 - Probable transmembrane protein, at 381,667 to 382,344 GFF2782 Position (kb) 379 380 381 382Strain fitness (log2 ratio) -2 -1 0 1 2at 379.170 kb on + strand, within GFF2779at 379.170 kb on + strand, within GFF2779at 379.170 kb on + strand, within GFF2779at 379.170 kb on + strand, within GFF2779at 379.170 kb on + strand, within GFF2779at 379.170 kb on + strand, within GFF2779at 379.171 kb on - strand, within GFF2779at 379.171 kb on - strand, within GFF2779at 379.171 kb on - strand, within GFF2779at 379.171 kb on - strand, within GFF2779at 379.347 kb on + strand, within GFF2779at 379.347 kb on + strand, within GFF2779at 379.348 kb on - strand, within GFF2779at 379.348 kb on - strand, within GFF2779at 379.509 kb on + strand, within GFF2779at 379.509 kb on + strand, within GFF2779at 379.510 kb on - strand, within GFF2779at 379.510 kb on - strand, within GFF2779at 379.510 kb on - strand, within GFF2779at 379.515 kb on + strand, within GFF2779at 379.516 kb on - strand, within GFF2779at 379.516 kb on - strand, within GFF2779at 379.516 kb on - strand, within GFF2779at 379.524 kb on + strand, within GFF2779at 379.524 kb on + strand, within GFF2779at 379.524 kb on + strand, within GFF2779at 379.524 kb on + strand, within GFF2779at 379.524 kb on + strand, within GFF2779at 379.525 kb on - strand, within GFF2779at 379.525 kb on - strand, within GFF2779at 379.525 kb on - strand, within GFF2779at 379.650 kb on + strand, within GFF2779at 379.677 kb on + strand, within GFF2779at 379.749 kb on + strand, within GFF2779at 379.756 kb on - strandat 379.756 kb on - strandat 379.830 kb on + strandat 379.902 kb on + strandat 379.902 kb on + strandat 379.903 kb on - strandat 379.903 kb on - strandat 379.903 kb on - strandat 380.058 kb on + strand, within GFF2780at 380.059 kb on - strand, within GFF2780at 380.232 kb on + strand, within GFF2780at 380.233 kb on - strand, within GFF2780at 380.233 kb on - strand, within GFF2780at 380.697 kb on + strand, within GFF2780at 380.697 kb on + strand, within GFF2780at 380.697 kb on + strand, within GFF2780at 380.697 kb on + strand, within GFF2780at 380.697 kb on + strand, within GFF2780at 380.698 kb on - strand, within GFF2780at 380.931 kb on + strand, within GFF2780at 380.931 kb on + strand, within GFF2780at 380.932 kb on - strand, within GFF2780at 380.932 kb on - strand, within GFF2780at 380.932 kb on - strand, within GFF2780at 380.943 kb on - strand, within GFF2780at 380.943 kb on - strand, within GFF2780at 380.943 kb on - strand, within GFF2780at 381.301 kb on - strandat 381.332 kb on - strandat 381.367 kb on + strandat 381.368 kb on - strandat 381.519 kb on + strand, within GFF2781at 381.520 kb on - strand, within GFF2781at 381.824 kb on + strand, within GFF2782at 381.824 kb on + strand, within GFF2782at 381.824 kb on + strand, within GFF2782at 381.825 kb on - strand, within GFF2782at 381.825 kb on - strand, within GFF2782at 381.825 kb on - strand, within GFF2782at 381.827 kb on + strand, within GFF2782at 381.827 kb on + strand, within GFF2782at 381.843 kb on - strand, within GFF2782at 381.914 kb on + strand, within GFF2782at 381.917 kb on + strand, within GFF2782at 381.917 kb on + strand, within GFF2782at 381.917 kb on + strand, within GFF2782at 381.918 kb on - strand, within GFF2782at 381.930 kb on - strand, within GFF2782at 381.930 kb on - strand, within GFF2782at 382.187 kb on + strand, within GFF2782at 382.187 kb on + strand, within GFF2782at 382.187 kb on - strand, within GFF2782at 382.188 kb on - strand, within GFF2782at 382.188 kb on - strand, within GFF2782at 382.188 kb on - strand, within GFF2782at 382.199 kb on + strand, within GFF2782at 382.199 kb on + strand, within GFF2782

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
remove
379,170 + GFF2779 0.14 +0.6
379,170 + GFF2779 0.14 +0.2
379,170 + GFF2779 0.14 +0.1
379,170 + GFF2779 0.14 +0.8
379,170 + GFF2779 0.14 -0.7
379,170 + GFF2779 0.14 +0.1
379,171 - GFF2779 0.14 +0.2
379,171 - GFF2779 0.14 -1.5
379,171 - GFF2779 0.14 +0.2
379,171 - GFF2779 0.14 -0.3
379,347 + GFF2779 0.37 -0.8
379,347 + GFF2779 0.37 -0.1
379,348 - GFF2779 0.37 +0.3
379,348 - GFF2779 0.37 +0.5
379,509 + GFF2779 0.58 -0.2
379,509 + GFF2779 0.58 +0.5
379,510 - GFF2779 0.58 -1.0
379,510 - GFF2779 0.58 +0.6
379,510 - GFF2779 0.58 -0.2
379,515 + GFF2779 0.59 +0.1
379,516 - GFF2779 0.59 +0.3
379,516 - GFF2779 0.59 +0.8
379,516 - GFF2779 0.59 +0.5
379,524 + GFF2779 0.60 -0.5
379,524 + GFF2779 0.60 -1.8
379,524 + GFF2779 0.60 -1.4
379,524 + GFF2779 0.60 +0.8
379,524 + GFF2779 0.60 -0.3
379,525 - GFF2779 0.60 +0.9
379,525 - GFF2779 0.60 -0.1
379,525 - GFF2779 0.60 +0.3
379,650 + GFF2779 0.76 +0.5
379,677 + GFF2779 0.80 -0.2
379,749 + GFF2779 0.89 +0.6
379,756 - -0.2
379,756 - +0.2
379,830 + +0.1
379,902 + +0.5
379,902 + -0.2
379,903 - -0.5
379,903 - -0.1
379,903 - -0.1
380,058 + GFF2780 0.16 -0.5
380,059 - GFF2780 0.16 -0.4
380,232 + GFF2780 0.28 -0.9
380,233 - GFF2780 0.28 -1.2
380,233 - GFF2780 0.28 +0.6
380,697 + GFF2780 0.61 -0.6
380,697 + GFF2780 0.61 +0.5
380,697 + GFF2780 0.61 -0.3
380,697 + GFF2780 0.61 -1.3
380,697 + GFF2780 0.61 -0.3
380,698 - GFF2780 0.61 -0.5
380,931 + GFF2780 0.77 -0.5
380,931 + GFF2780 0.77 +0.2
380,932 - GFF2780 0.77 -1.2
380,932 - GFF2780 0.77 +0.7
380,932 - GFF2780 0.77 +0.5
380,943 - GFF2780 0.78 +1.5
380,943 - GFF2780 0.78 -0.2
380,943 - GFF2780 0.78 -0.9
381,301 - +2.1
381,332 - +0.1
381,367 + -0.1
381,368 - +0.5
381,519 + GFF2781 0.18 +0.1
381,520 - GFF2781 0.19 -0.4
381,824 + GFF2782 0.23 -0.4
381,824 + GFF2782 0.23 +1.4
381,824 + GFF2782 0.23 -0.2
381,825 - GFF2782 0.23 +0.2
381,825 - GFF2782 0.23 +0.0
381,825 - GFF2782 0.23 -0.2
381,827 + GFF2782 0.24 +1.1
381,827 + GFF2782 0.24 -0.9
381,843 - GFF2782 0.26 -0.5
381,914 + GFF2782 0.36 +1.1
381,917 + GFF2782 0.37 +0.3
381,917 + GFF2782 0.37 +0.7
381,917 + GFF2782 0.37 +0.5
381,918 - GFF2782 0.37 -0.2
381,930 - GFF2782 0.39 -0.3
381,930 - GFF2782 0.39 -0.4
382,187 + GFF2782 0.77 -1.3
382,187 + GFF2782 0.77 +0.2
382,187 - GFF2782 0.77 +1.1
382,188 - GFF2782 0.77 -0.7
382,188 - GFF2782 0.77 -1.3
382,188 - GFF2782 0.77 +0.1
382,199 + GFF2782 0.78 +0.6
382,199 + GFF2782 0.78 +0.2

Or see this region's nucleotide sequence