Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2736 and GFF2737 overlap by 4 nucleotides GFF2737 and GFF2738 are separated by 126 nucleotides GFF2738 and GFF2739 are separated by 17 nucleotides GFF2739 and GFF2740 are separated by 108 nucleotides
GFF2736 - Glycine cleavage system transcriptional activator, at 332,559 to 333,428
GFF2736
GFF2737 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 333,425 to 334,273
GFF2737
GFF2738 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 334,400 to 335,740
GFF2738
GFF2739 - lipoprotein, putative, at 335,758 to 336,564
GFF2739
GFF2740 - Ammonia monooxygenase, at 336,673 to 337,695
GFF2740
Position (kb) 334
335
336 Strain fitness (log2 ratio) -2
-1
0
1
2 at 333.663 kb on + strand, within GFF2737 at 333.663 kb on + strand, within GFF2737 at 333.664 kb on - strand, within GFF2737 at 333.664 kb on - strand, within GFF2737 at 333.664 kb on - strand, within GFF2737 at 333.766 kb on - strand, within GFF2737 at 333.766 kb on - strand, within GFF2737 at 333.879 kb on + strand, within GFF2737 at 333.879 kb on + strand, within GFF2737 at 334.161 kb on + strand, within GFF2737 at 334.161 kb on + strand, within GFF2737 at 334.252 kb on + strand at 334.261 kb on - strand at 334.261 kb on - strand at 334.406 kb on + strand at 334.406 kb on + strand at 334.406 kb on + strand at 334.407 kb on - strand at 334.407 kb on - strand at 334.502 kb on + strand at 334.503 kb on - strand at 334.503 kb on - strand at 334.503 kb on - strand at 334.503 kb on - strand at 334.503 kb on - strand at 334.540 kb on + strand, within GFF2738 at 334.625 kb on + strand, within GFF2738 at 334.626 kb on - strand, within GFF2738 at 334.772 kb on + strand, within GFF2738 at 334.773 kb on - strand, within GFF2738 at 334.805 kb on - strand, within GFF2738 at 334.889 kb on + strand, within GFF2738 at 334.955 kb on + strand, within GFF2738 at 334.955 kb on + strand, within GFF2738 at 334.956 kb on - strand, within GFF2738 at 334.956 kb on - strand, within GFF2738 at 334.956 kb on - strand, within GFF2738 at 335.087 kb on + strand, within GFF2738 at 335.087 kb on + strand, within GFF2738 at 335.088 kb on - strand, within GFF2738 at 335.105 kb on + strand, within GFF2738 at 335.210 kb on + strand, within GFF2738 at 335.210 kb on + strand, within GFF2738 at 335.211 kb on - strand, within GFF2738 at 335.304 kb on - strand, within GFF2738 at 335.304 kb on - strand, within GFF2738 at 335.366 kb on + strand, within GFF2738 at 335.367 kb on - strand, within GFF2738 at 335.373 kb on - strand, within GFF2738 at 335.373 kb on - strand, within GFF2738 at 335.373 kb on - strand, within GFF2738 at 335.669 kb on + strand at 335.670 kb on - strand at 335.670 kb on - strand at 335.670 kb on - strand at 335.738 kb on + strand at 335.739 kb on - strand at 335.739 kb on - strand at 336.233 kb on + strand, within GFF2739 at 336.234 kb on - strand, within GFF2739 at 336.572 kb on + strand at 336.575 kb on + strand at 336.576 kb on - strand at 336.576 kb on - strand at 336.576 kb on - strand at 336.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 333,663 + GFF2737 0.28 +0.5 333,663 + GFF2737 0.28 -0.8 333,664 - GFF2737 0.28 +0.5 333,664 - GFF2737 0.28 +0.2 333,664 - GFF2737 0.28 +0.3 333,766 - GFF2737 0.40 +0.1 333,766 - GFF2737 0.40 +0.8 333,879 + GFF2737 0.53 +1.1 333,879 + GFF2737 0.53 -1.8 334,161 + GFF2737 0.87 +0.6 334,161 + GFF2737 0.87 +1.1 334,252 + -0.2 334,261 - -0.7 334,261 - +0.1 334,406 + -0.6 334,406 + +1.1 334,406 + -0.5 334,407 - +0.3 334,407 - -1.1 334,502 + +2.6 334,503 - -0.5 334,503 - -0.3 334,503 - -0.0 334,503 - -0.4 334,503 - +1.2 334,540 + GFF2738 0.10 +0.3 334,625 + GFF2738 0.17 -0.3 334,626 - GFF2738 0.17 -0.0 334,772 + GFF2738 0.28 +2.1 334,773 - GFF2738 0.28 -0.7 334,805 - GFF2738 0.30 +0.0 334,889 + GFF2738 0.36 -0.6 334,955 + GFF2738 0.41 -0.6 334,955 + GFF2738 0.41 -0.7 334,956 - GFF2738 0.41 -0.8 334,956 - GFF2738 0.41 -0.3 334,956 - GFF2738 0.41 +0.4 335,087 + GFF2738 0.51 -0.3 335,087 + GFF2738 0.51 +1.1 335,088 - GFF2738 0.51 -0.2 335,105 + GFF2738 0.53 -1.4 335,210 + GFF2738 0.60 +0.9 335,210 + GFF2738 0.60 +0.7 335,211 - GFF2738 0.60 +0.1 335,304 - GFF2738 0.67 -0.5 335,304 - GFF2738 0.67 +0.5 335,366 + GFF2738 0.72 -0.5 335,367 - GFF2738 0.72 -1.4 335,373 - GFF2738 0.73 -1.0 335,373 - GFF2738 0.73 +0.6 335,373 - GFF2738 0.73 -1.0 335,669 + +0.5 335,670 - -0.6 335,670 - +0.5 335,670 - -0.6 335,738 + +1.4 335,739 - -0.3 335,739 - +0.1 336,233 + GFF2739 0.59 -0.8 336,234 - GFF2739 0.59 +0.9 336,572 + -0.9 336,575 + +0.7 336,576 - -0.8 336,576 - +0.8 336,576 - -0.7 336,576 - +0.1
Or see this region's nucleotide sequence