Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2724 and GFF2725 are separated by 4 nucleotides GFF2725 and GFF2726 are separated by 68 nucleotides GFF2726 and GFF2727 are separated by 48 nucleotides
GFF2724 - hypothetical protein, at 314,365 to 315,942
GFF2724
GFF2725 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 315,947 to 316,411
GFF2725
GFF2726 - Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12), at 316,480 to 319,488
GFF2726
GFF2727 - JmjC domain protein, at 319,537 to 320,595
GFF2727
Position (kb) 316
317
318
319
320 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 315.524 kb on - strand, within GFF2724 at 315.547 kb on + strand, within GFF2724 at 315.548 kb on - strand, within GFF2724 at 315.548 kb on - strand, within GFF2724 at 315.565 kb on + strand, within GFF2724 at 315.566 kb on - strand, within GFF2724 at 315.566 kb on - strand, within GFF2724 at 315.566 kb on - strand, within GFF2724 at 315.566 kb on - strand, within GFF2724 at 315.585 kb on + strand, within GFF2724 at 315.586 kb on - strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.685 kb on + strand, within GFF2724 at 315.685 kb on + strand, within GFF2724 at 315.686 kb on - strand, within GFF2724 at 315.686 kb on - strand, within GFF2724 at 315.686 kb on - strand, within GFF2724 at 315.686 kb on - strand, within GFF2724 at 315.686 kb on - strand, within GFF2724 at 315.727 kb on + strand, within GFF2724 at 315.748 kb on + strand, within GFF2724 at 315.749 kb on - strand, within GFF2724 at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.796 kb on - strand at 315.796 kb on - strand at 315.796 kb on - strand at 315.796 kb on - strand at 315.796 kb on - strand at 315.796 kb on - strand at 315.838 kb on + strand at 315.839 kb on - strand at 315.847 kb on + strand at 315.847 kb on + strand at 315.848 kb on - strand at 315.871 kb on + strand at 315.872 kb on - strand at 315.901 kb on + strand at 315.901 kb on + strand at 315.901 kb on + strand at 315.901 kb on + strand at 315.902 kb on - strand at 315.902 kb on - strand at 315.902 kb on - strand at 315.902 kb on - strand at 315.993 kb on + strand at 315.993 kb on + strand at 315.993 kb on + strand at 315.993 kb on + strand at 315.994 kb on - strand, within GFF2725 at 315.994 kb on - strand, within GFF2725 at 315.994 kb on - strand, within GFF2725 at 315.994 kb on - strand, within GFF2725 at 316.089 kb on + strand, within GFF2725 at 316.089 kb on + strand, within GFF2725 at 316.090 kb on - strand, within GFF2725 at 316.090 kb on - strand, within GFF2725 at 316.251 kb on + strand, within GFF2725 at 316.251 kb on + strand, within GFF2725 at 316.252 kb on - strand, within GFF2725 at 316.263 kb on + strand, within GFF2725 at 316.263 kb on + strand, within GFF2725 at 316.264 kb on - strand, within GFF2725 at 316.264 kb on - strand, within GFF2725 at 316.264 kb on - strand, within GFF2725 at 316.703 kb on - strand at 316.703 kb on - strand at 316.853 kb on + strand, within GFF2726 at 317.117 kb on - strand, within GFF2726 at 317.201 kb on - strand, within GFF2726 at 317.230 kb on + strand, within GFF2726 at 317.230 kb on + strand, within GFF2726 at 317.443 kb on + strand, within GFF2726 at 317.443 kb on + strand, within GFF2726 at 317.444 kb on - strand, within GFF2726 at 317.584 kb on + strand, within GFF2726 at 317.584 kb on + strand, within GFF2726 at 317.778 kb on + strand, within GFF2726 at 317.778 kb on + strand, within GFF2726 at 317.779 kb on - strand, within GFF2726 at 317.779 kb on - strand, within GFF2726 at 317.782 kb on + strand, within GFF2726 at 317.782 kb on + strand, within GFF2726 at 317.783 kb on - strand, within GFF2726 at 317.783 kb on - strand, within GFF2726 at 317.825 kb on - strand, within GFF2726 at 317.860 kb on + strand, within GFF2726 at 317.861 kb on - strand, within GFF2726 at 317.861 kb on - strand, within GFF2726 at 317.861 kb on - strand, within GFF2726 at 318.017 kb on - strand, within GFF2726 at 318.343 kb on + strand, within GFF2726 at 318.344 kb on - strand, within GFF2726 at 318.346 kb on + strand, within GFF2726 at 318.347 kb on - strand, within GFF2726 at 319.228 kb on + strand at 319.309 kb on + strand at 319.309 kb on + strand at 319.309 kb on + strand at 319.310 kb on - strand at 319.310 kb on - strand at 319.310 kb on - strand at 319.589 kb on - strand at 319.885 kb on + strand, within GFF2727 at 319.885 kb on + strand, within GFF2727 at 319.886 kb on - strand, within GFF2727 at 319.886 kb on - strand, within GFF2727 at 319.886 kb on - strand, within GFF2727 at 319.886 kb on - strand, within GFF2727 at 320.029 kb on + strand, within GFF2727 at 320.029 kb on + strand, within GFF2727 at 320.029 kb on + strand, within GFF2727 at 320.116 kb on + strand, within GFF2727 at 320.116 kb on + strand, within GFF2727 at 320.116 kb on + strand, within GFF2727 at 320.116 kb on + strand, within GFF2727 at 320.117 kb on - strand, within GFF2727 at 320.117 kb on - strand, within GFF2727 at 320.117 kb on - strand, within GFF2727 at 320.119 kb on + strand, within GFF2727 at 320.120 kb on - strand, within GFF2727 at 320.120 kb on - strand, within GFF2727 at 320.120 kb on - strand, within GFF2727 at 320.120 kb on - strand, within GFF2727 at 320.356 kb on + strand, within GFF2727 at 320.357 kb on - strand, within GFF2727 at 320.357 kb on - strand, within GFF2727 at 320.374 kb on + strand, within GFF2727 at 320.374 kb on + strand, within GFF2727 at 320.375 kb on - strand, within GFF2727 at 320.375 kb on - strand, within GFF2727
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 315,524 - GFF2724 0.73 -1.5 315,547 + GFF2724 0.75 +0.5 315,548 - GFF2724 0.75 -0.1 315,548 - GFF2724 0.75 -0.1 315,565 + GFF2724 0.76 +0.0 315,566 - GFF2724 0.76 -0.6 315,566 - GFF2724 0.76 +1.6 315,566 - GFF2724 0.76 -0.1 315,566 - GFF2724 0.76 +0.7 315,585 + GFF2724 0.77 -0.0 315,586 - GFF2724 0.77 +0.5 315,592 + GFF2724 0.78 +0.6 315,592 + GFF2724 0.78 -0.2 315,592 + GFF2724 0.78 +0.0 315,592 + GFF2724 0.78 -0.1 315,592 + GFF2724 0.78 -0.2 315,592 + GFF2724 0.78 +0.8 315,592 + GFF2724 0.78 -0.4 315,593 - GFF2724 0.78 +0.2 315,593 - GFF2724 0.78 -0.7 315,593 - GFF2724 0.78 +0.1 315,593 - GFF2724 0.78 -0.3 315,593 - GFF2724 0.78 +0.3 315,593 - GFF2724 0.78 +0.6 315,593 - GFF2724 0.78 +0.0 315,593 - GFF2724 0.78 +0.1 315,593 - GFF2724 0.78 +0.3 315,685 + GFF2724 0.84 -0.4 315,685 + GFF2724 0.84 +1.0 315,686 - GFF2724 0.84 +0.2 315,686 - GFF2724 0.84 +0.4 315,686 - GFF2724 0.84 +0.5 315,686 - GFF2724 0.84 +0.0 315,686 - GFF2724 0.84 +0.3 315,727 + GFF2724 0.86 -0.9 315,748 + GFF2724 0.88 -0.3 315,749 - GFF2724 0.88 -0.6 315,795 + +0.6 315,795 + -0.3 315,795 + -0.2 315,795 + +0.1 315,795 + -0.2 315,795 + +0.2 315,795 + +0.9 315,795 + +2.0 315,795 + +0.2 315,795 + +0.0 315,795 + -0.3 315,795 + -0.8 315,795 + -0.4 315,796 - -0.6 315,796 - +1.5 315,796 - -0.0 315,796 - +0.2 315,796 - +0.6 315,796 - -0.5 315,838 + +0.0 315,839 - -0.2 315,847 + -0.0 315,847 + +0.9 315,848 - +0.5 315,871 + +0.4 315,872 - -0.4 315,901 + -0.0 315,901 + +0.0 315,901 + -0.1 315,901 + -0.4 315,902 - -0.3 315,902 - -1.5 315,902 - -0.1 315,902 - +1.8 315,993 + -1.5 315,993 + -0.3 315,993 + -2.6 315,993 + +1.0 315,994 - GFF2725 0.10 -2.0 315,994 - GFF2725 0.10 -1.6 315,994 - GFF2725 0.10 -1.0 315,994 - GFF2725 0.10 +0.5 316,089 + GFF2725 0.31 -1.0 316,089 + GFF2725 0.31 -2.5 316,090 - GFF2725 0.31 -1.5 316,090 - GFF2725 0.31 -2.0 316,251 + GFF2725 0.65 -0.8 316,251 + GFF2725 0.65 -1.4 316,252 - GFF2725 0.66 -2.3 316,263 + GFF2725 0.68 -1.6 316,263 + GFF2725 0.68 -1.4 316,264 - GFF2725 0.68 -0.5 316,264 - GFF2725 0.68 -1.4 316,264 - GFF2725 0.68 -0.5 316,703 - -2.7 316,703 - -1.8 316,853 + GFF2726 0.12 -2.7 317,117 - GFF2726 0.21 -3.5 317,201 - GFF2726 0.24 -1.7 317,230 + GFF2726 0.25 +1.0 317,230 + GFF2726 0.25 -3.1 317,443 + GFF2726 0.32 -1.8 317,443 + GFF2726 0.32 -1.3 317,444 - GFF2726 0.32 -2.8 317,584 + GFF2726 0.37 -2.2 317,584 + GFF2726 0.37 -3.6 317,778 + GFF2726 0.43 -0.5 317,778 + GFF2726 0.43 -1.5 317,779 - GFF2726 0.43 -2.1 317,779 - GFF2726 0.43 -2.2 317,782 + GFF2726 0.43 -2.4 317,782 + GFF2726 0.43 -2.3 317,783 - GFF2726 0.43 -2.1 317,783 - GFF2726 0.43 -1.7 317,825 - GFF2726 0.45 -0.3 317,860 + GFF2726 0.46 -0.3 317,861 - GFF2726 0.46 -2.7 317,861 - GFF2726 0.46 -3.0 317,861 - GFF2726 0.46 -2.0 318,017 - GFF2726 0.51 -1.4 318,343 + GFF2726 0.62 +0.0 318,344 - GFF2726 0.62 +0.5 318,346 + GFF2726 0.62 -0.5 318,347 - GFF2726 0.62 -1.3 319,228 + -0.6 319,309 + -1.9 319,309 + -4.5 319,309 + -3.4 319,310 - -2.4 319,310 - -2.4 319,310 - +0.5 319,589 - +1.1 319,885 + GFF2727 0.33 +0.6 319,885 + GFF2727 0.33 -0.1 319,886 - GFF2727 0.33 -0.3 319,886 - GFF2727 0.33 -1.9 319,886 - GFF2727 0.33 +0.4 319,886 - GFF2727 0.33 -0.4 320,029 + GFF2727 0.46 +0.2 320,029 + GFF2727 0.46 -1.3 320,029 + GFF2727 0.46 +0.3 320,116 + GFF2727 0.55 +1.1 320,116 + GFF2727 0.55 +0.1 320,116 + GFF2727 0.55 +0.9 320,116 + GFF2727 0.55 +0.1 320,117 - GFF2727 0.55 -0.0 320,117 - GFF2727 0.55 -0.4 320,117 - GFF2727 0.55 -0.4 320,119 + GFF2727 0.55 -0.4 320,120 - GFF2727 0.55 -0.3 320,120 - GFF2727 0.55 -0.4 320,120 - GFF2727 0.55 -1.4 320,120 - GFF2727 0.55 -0.2 320,356 + GFF2727 0.77 +1.8 320,357 - GFF2727 0.77 +0.2 320,357 - GFF2727 0.77 +0.1 320,374 + GFF2727 0.79 -0.1 320,374 + GFF2727 0.79 -0.2 320,375 - GFF2727 0.79 +0.2 320,375 - GFF2727 0.79 +0.1
Or see this region's nucleotide sequence