Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2701

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2699 and GFF2700 are separated by 216 nucleotidesGFF2700 and GFF2701 are separated by 100 nucleotidesGFF2701 and GFF2702 are separated by 3 nucleotides GFF2699 - sensor histidine kinase, at 289,376 to 291,004 GFF2699 GFF2700 - Transcriptional regulator, AsnC family, at 291,221 to 291,709 GFF2700 GFF2701 - Pyruvate dehydrogenase E1 component (EC 1.2.4.1), at 291,810 to 294,395 GFF2701 GFF2702 - Membrane-bound metal-dependent hydrolase, at 294,399 to 295,415 GFF2702 Position (kb) 291 292 293 294 295Strain fitness (log2 ratio) -1 0 1at 290.885 kb on - strandat 290.997 kb on - strandat 291.182 kb on + strandat 291.255 kb on + strandat 291.256 kb on - strandat 291.375 kb on + strand, within GFF2700at 291.376 kb on - strand, within GFF2700at 291.400 kb on - strand, within GFF2700at 291.537 kb on + strand, within GFF2700at 291.537 kb on + strand, within GFF2700at 291.537 kb on + strand, within GFF2700at 291.538 kb on - strand, within GFF2700at 291.538 kb on - strand, within GFF2700at 291.784 kb on - strandat 291.996 kb on + strandat 291.996 kb on + strandat 291.997 kb on - strandat 292.119 kb on + strand, within GFF2701at 292.119 kb on + strand, within GFF2701at 292.119 kb on + strand, within GFF2701at 292.119 kb on + strand, within GFF2701at 292.119 kb on + strand, within GFF2701at 292.149 kb on + strand, within GFF2701at 292.149 kb on + strand, within GFF2701at 292.149 kb on + strand, within GFF2701at 292.149 kb on + strand, within GFF2701at 292.263 kb on + strand, within GFF2701at 292.314 kb on + strand, within GFF2701at 292.444 kb on - strand, within GFF2701at 293.185 kb on - strand, within GFF2701at 293.275 kb on - strand, within GFF2701at 293.275 kb on - strand, within GFF2701at 293.448 kb on + strand, within GFF2701at 293.448 kb on + strand, within GFF2701at 293.448 kb on + strand, within GFF2701at 293.449 kb on - strand, within GFF2701at 293.449 kb on - strand, within GFF2701at 293.590 kb on - strand, within GFF2701at 293.590 kb on - strand, within GFF2701at 293.590 kb on - strand, within GFF2701at 293.622 kb on + strand, within GFF2701at 293.623 kb on - strand, within GFF2701at 293.628 kb on + strand, within GFF2701at 293.628 kb on + strand, within GFF2701at 293.629 kb on - strand, within GFF2701at 293.629 kb on - strand, within GFF2701at 293.629 kb on - strand, within GFF2701at 293.629 kb on - strand, within GFF2701at 293.631 kb on + strand, within GFF2701at 293.632 kb on - strand, within GFF2701at 293.632 kb on - strand, within GFF2701at 293.632 kb on - strand, within GFF2701at 293.808 kb on + strand, within GFF2701at 293.809 kb on - strand, within GFF2701at 293.892 kb on + strand, within GFF2701at 293.892 kb on + strand, within GFF2701at 293.893 kb on - strand, within GFF2701at 293.895 kb on + strand, within GFF2701at 293.895 kb on + strand, within GFF2701at 293.895 kb on + strand, within GFF2701at 293.896 kb on - strand, within GFF2701at 293.896 kb on - strand, within GFF2701at 293.919 kb on + strand, within GFF2701at 294.556 kb on + strand, within GFF2702at 294.557 kb on - strand, within GFF2702at 294.557 kb on - strand, within GFF2702at 294.622 kb on + strand, within GFF2702at 294.623 kb on - strand, within GFF2702at 294.658 kb on + strand, within GFF2702at 294.659 kb on - strand, within GFF2702at 294.746 kb on - strand, within GFF2702at 294.746 kb on - strand, within GFF2702at 294.746 kb on - strand, within GFF2702at 294.746 kb on - strand, within GFF2702at 294.914 kb on - strand, within GFF2702at 294.914 kb on - strand, within GFF2702at 295.012 kb on + strand, within GFF2702at 295.012 kb on + strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.042 kb on - strand, within GFF2702at 295.042 kb on - strand, within GFF2702at 295.087 kb on + strand, within GFF2702at 295.101 kb on - strand, within GFF2702

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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290,885 - -0.3
290,997 - +0.0
291,182 + -1.0
291,255 + -0.1
291,256 - -0.5
291,375 + GFF2700 0.31 +0.0
291,376 - GFF2700 0.32 -0.2
291,400 - GFF2700 0.37 -0.0
291,537 + GFF2700 0.65 +0.1
291,537 + GFF2700 0.65 -0.3
291,537 + GFF2700 0.65 -0.2
291,538 - GFF2700 0.65 -0.5
291,538 - GFF2700 0.65 +0.4
291,784 - -0.1
291,996 + +0.2
291,996 + -0.1
291,997 - -0.7
292,119 + GFF2701 0.12 +0.0
292,119 + GFF2701 0.12 +0.7
292,119 + GFF2701 0.12 +0.2
292,119 + GFF2701 0.12 +0.5
292,119 + GFF2701 0.12 +0.7
292,149 + GFF2701 0.13 +0.1
292,149 + GFF2701 0.13 +1.3
292,149 + GFF2701 0.13 +0.9
292,149 + GFF2701 0.13 +1.3
292,263 + GFF2701 0.18 +0.7
292,314 + GFF2701 0.19 +0.3
292,444 - GFF2701 0.25 +0.4
293,185 - GFF2701 0.53 -0.5
293,275 - GFF2701 0.57 +0.5
293,275 - GFF2701 0.57 -1.3
293,448 + GFF2701 0.63 +0.1
293,448 + GFF2701 0.63 +0.7
293,448 + GFF2701 0.63 +0.2
293,449 - GFF2701 0.63 -1.0
293,449 - GFF2701 0.63 -1.3
293,590 - GFF2701 0.69 -0.5
293,590 - GFF2701 0.69 -0.6
293,590 - GFF2701 0.69 -0.8
293,622 + GFF2701 0.70 +0.3
293,623 - GFF2701 0.70 -1.3
293,628 + GFF2701 0.70 +0.6
293,628 + GFF2701 0.70 +0.3
293,629 - GFF2701 0.70 -0.6
293,629 - GFF2701 0.70 +1.0
293,629 - GFF2701 0.70 +1.5
293,629 - GFF2701 0.70 -0.0
293,631 + GFF2701 0.70 +0.2
293,632 - GFF2701 0.70 -1.3
293,632 - GFF2701 0.70 -0.1
293,632 - GFF2701 0.70 +0.5
293,808 + GFF2701 0.77 -0.1
293,809 - GFF2701 0.77 -0.1
293,892 + GFF2701 0.81 -1.4
293,892 + GFF2701 0.81 -0.7
293,893 - GFF2701 0.81 -0.5
293,895 + GFF2701 0.81 +0.5
293,895 + GFF2701 0.81 +0.4
293,895 + GFF2701 0.81 +1.5
293,896 - GFF2701 0.81 -0.5
293,896 - GFF2701 0.81 -0.4
293,919 + GFF2701 0.82 -0.1
294,556 + GFF2702 0.15 -0.8
294,557 - GFF2702 0.16 -0.1
294,557 - GFF2702 0.16 -0.2
294,622 + GFF2702 0.22 -1.0
294,623 - GFF2702 0.22 +0.1
294,658 + GFF2702 0.25 -0.1
294,659 - GFF2702 0.26 -1.5
294,746 - GFF2702 0.34 -0.8
294,746 - GFF2702 0.34 -0.2
294,746 - GFF2702 0.34 -1.6
294,746 - GFF2702 0.34 +0.1
294,914 - GFF2702 0.51 +0.2
294,914 - GFF2702 0.51 -1.3
295,012 + GFF2702 0.60 -0.2
295,012 + GFF2702 0.60 -0.2
295,013 - GFF2702 0.60 -0.1
295,013 - GFF2702 0.60 +1.0
295,013 - GFF2702 0.60 +0.3
295,013 - GFF2702 0.60 +1.0
295,013 - GFF2702 0.60 +0.2
295,042 - GFF2702 0.63 -0.3
295,042 - GFF2702 0.63 +0.0
295,087 + GFF2702 0.68 -0.0
295,101 - GFF2702 0.69 +0.2

Or see this region's nucleotide sequence