Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2627 and GFF2628 overlap by 4 nucleotides GFF2628 and GFF2629 are separated by 27 nucleotides GFF2629 and GFF2630 are separated by 489 nucleotides
GFF2627 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 219,911 to 220,705
GFF2627
GFF2628 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 220,702 to 221,520
GFF2628
GFF2629 - Probable VANILLIN dehydrogenase oxidoreductase protein (EC 1.-.-.-), at 221,548 to 223,002
GFF2629
GFF2630 - Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72), at 223,492 to 225,051
GFF2630
Position (kb) 221
222
223
224 Strain fitness (log2 ratio) -2
-1
0
1
2 at 221.353 kb on + strand, within GFF2628 at 221.354 kb on - strand, within GFF2628 at 221.354 kb on - strand, within GFF2628 at 221.911 kb on + strand, within GFF2629 at 222.149 kb on - strand, within GFF2629 at 222.149 kb on - strand, within GFF2629 at 222.149 kb on - strand, within GFF2629 at 222.676 kb on + strand, within GFF2629 at 222.763 kb on + strand, within GFF2629 at 222.763 kb on + strand, within GFF2629 at 222.764 kb on - strand, within GFF2629 at 223.202 kb on + strand at 223.203 kb on - strand at 223.203 kb on - strand at 223.224 kb on + strand at 223.264 kb on + strand at 223.265 kb on - strand at 223.290 kb on + strand at 223.291 kb on - strand at 223.291 kb on - strand at 223.291 kb on - strand at 223.319 kb on + strand at 223.320 kb on - strand at 223.320 kb on - strand at 223.359 kb on + strand at 223.359 kb on + strand at 223.360 kb on - strand at 223.360 kb on - strand at 223.360 kb on - strand at 223.360 kb on - strand at 223.371 kb on + strand at 223.392 kb on + strand at 223.392 kb on + strand at 223.392 kb on + strand at 223.392 kb on + strand at 223.393 kb on - strand at 223.393 kb on - strand at 223.393 kb on - strand at 223.396 kb on + strand at 223.397 kb on - strand at 223.397 kb on - strand at 223.427 kb on + strand at 223.428 kb on - strand at 223.445 kb on + strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.468 kb on - strand at 223.468 kb on - strand at 223.468 kb on - strand at 223.468 kb on - strand at 223.468 kb on - strand at 223.588 kb on + strand at 223.588 kb on + strand at 223.588 kb on + strand at 223.588 kb on + strand at 223.589 kb on - strand at 223.589 kb on - strand at 223.589 kb on - strand at 223.589 kb on - strand at 223.589 kb on - strand at 223.609 kb on + strand at 223.639 kb on + strand at 223.639 kb on + strand at 223.640 kb on - strand at 223.640 kb on - strand at 223.640 kb on - strand at 223.670 kb on - strand, within GFF2630 at 223.723 kb on - strand, within GFF2630 at 223.738 kb on + strand, within GFF2630 at 223.739 kb on - strand, within GFF2630 at 223.739 kb on - strand, within GFF2630 at 223.739 kb on - strand, within GFF2630 at 223.739 kb on - strand, within GFF2630 at 223.739 kb on - strand, within GFF2630 at 223.739 kb on - strand, within GFF2630 at 223.760 kb on + strand, within GFF2630 at 223.761 kb on - strand, within GFF2630 at 223.766 kb on + strand, within GFF2630 at 223.767 kb on - strand, within GFF2630 at 223.767 kb on - strand, within GFF2630 at 223.767 kb on - strand, within GFF2630 at 223.780 kb on - strand, within GFF2630
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 221,353 + GFF2628 0.79 -1.4 221,354 - GFF2628 0.80 -1.1 221,354 - GFF2628 0.80 +1.1 221,911 + GFF2629 0.25 +0.4 222,149 - GFF2629 0.41 +1.1 222,149 - GFF2629 0.41 +1.6 222,149 - GFF2629 0.41 -0.6 222,676 + GFF2629 0.78 +0.3 222,763 + GFF2629 0.84 -0.5 222,763 + GFF2629 0.84 -0.3 222,764 - GFF2629 0.84 -0.4 223,202 + -0.5 223,203 - -1.8 223,203 - -0.8 223,224 + -0.1 223,264 + -0.2 223,265 - -0.9 223,290 + -0.7 223,291 - -0.8 223,291 - -0.1 223,291 - +1.1 223,319 + +2.1 223,320 - +1.1 223,320 - -0.6 223,359 + -1.4 223,359 + +0.5 223,360 - +0.0 223,360 - -0.1 223,360 - +0.1 223,360 - -0.4 223,371 + +0.1 223,392 + +0.1 223,392 + +0.1 223,392 + +0.4 223,392 + -0.9 223,393 - -1.3 223,393 - +0.2 223,393 - -0.5 223,396 + -0.0 223,397 - -0.9 223,397 - +0.1 223,427 + +0.5 223,428 - -0.4 223,445 + -0.3 223,467 + -0.3 223,467 + +0.7 223,467 + -0.3 223,467 + -0.7 223,467 + +1.6 223,468 - -0.1 223,468 - -1.9 223,468 - +0.6 223,468 - -1.0 223,468 - -0.2 223,588 + +0.4 223,588 + +1.2 223,588 + -1.1 223,588 + +1.1 223,589 - +0.1 223,589 - +0.7 223,589 - -0.9 223,589 - +0.1 223,589 - +0.7 223,609 + -0.3 223,639 + -0.1 223,639 + -0.2 223,640 - -0.4 223,640 - -0.8 223,640 - -0.0 223,670 - GFF2630 0.11 +0.5 223,723 - GFF2630 0.15 -0.0 223,738 + GFF2630 0.16 +0.6 223,739 - GFF2630 0.16 +0.8 223,739 - GFF2630 0.16 -0.8 223,739 - GFF2630 0.16 -0.4 223,739 - GFF2630 0.16 -0.1 223,739 - GFF2630 0.16 +1.1 223,739 - GFF2630 0.16 -0.1 223,760 + GFF2630 0.17 -0.1 223,761 - GFF2630 0.17 +0.2 223,766 + GFF2630 0.18 -0.5 223,767 - GFF2630 0.18 +0.1 223,767 - GFF2630 0.18 -0.1 223,767 - GFF2630 0.18 -0.4 223,780 - GFF2630 0.18 +0.7
Or see this region's nucleotide sequence