Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2590 and GFF2591 are separated by 16 nucleotides GFF2591 and GFF2592 are separated by 57 nucleotides GFF2592 and GFF2593 are separated by 180 nucleotides GFF2593 and GFF2594 are separated by 5 nucleotides
GFF2590 - Transcriptional regulator, MarR family, at 184,619 to 185,095
GFF2590
GFF2591 - VfmD protein, at 185,112 to 185,996
GFF2591
GFF2592 - Predicted transcriptional regulator for fatty acid degradation FadP, TetR family, at 186,054 to 186,629
GFF2592
GFF2593 - hypothetical protein, at 186,810 to 187,262
GFF2593
GFF2594 - Adenylate cyclase (EC 4.6.1.1), at 187,268 to 188,623
GFF2594
Position (kb) 186
187 Strain fitness (log2 ratio) -2
-1
0
1 at 185.093 kb on + strand at 185.093 kb on + strand at 185.093 kb on + strand at 185.093 kb on + strand at 185.093 kb on + strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.419 kb on + strand, within GFF2591 at 185.419 kb on - strand, within GFF2591 at 185.420 kb on - strand, within GFF2591 at 185.570 kb on - strand, within GFF2591 at 185.873 kb on - strand, within GFF2591 at 185.959 kb on + strand at 185.959 kb on + strand at 185.959 kb on + strand at 185.959 kb on + strand at 185.960 kb on - strand at 186.331 kb on + strand, within GFF2592 at 186.331 kb on + strand, within GFF2592 at 186.332 kb on - strand, within GFF2592 at 186.924 kb on + strand, within GFF2593 at 186.924 kb on + strand, within GFF2593 at 186.924 kb on + strand, within GFF2593 at 186.925 kb on - strand, within GFF2593 at 186.925 kb on - strand, within GFF2593 at 186.925 kb on - strand, within GFF2593 at 186.925 kb on - strand, within GFF2593 at 187.089 kb on + strand, within GFF2593 at 187.090 kb on - strand, within GFF2593 at 187.358 kb on + strand at 187.358 kb on + strand at 187.358 kb on + strand at 187.359 kb on + strand at 187.359 kb on - strand at 187.359 kb on - strand at 187.359 kb on - strand at 187.374 kb on - strand at 187.376 kb on + strand at 187.377 kb on - strand at 187.377 kb on - strand at 187.493 kb on + strand, within GFF2594 at 187.493 kb on + strand, within GFF2594 at 187.494 kb on - strand, within GFF2594 at 187.512 kb on - strand, within GFF2594
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 185,093 + -0.3 185,093 + +0.1 185,093 + -0.7 185,093 + +0.5 185,093 + +0.0 185,094 - -0.0 185,094 - -0.8 185,094 - +0.6 185,094 - +1.1 185,094 - -0.4 185,094 - +0.3 185,094 - -0.7 185,419 + GFF2591 0.35 -0.4 185,419 - GFF2591 0.35 +0.5 185,420 - GFF2591 0.35 +0.1 185,570 - GFF2591 0.52 +0.5 185,873 - GFF2591 0.86 +0.4 185,959 + -0.5 185,959 + +0.4 185,959 + +0.2 185,959 + +0.5 185,960 - +0.1 186,331 + GFF2592 0.48 -2.3 186,331 + GFF2592 0.48 -0.8 186,332 - GFF2592 0.48 -0.2 186,924 + GFF2593 0.25 +0.4 186,924 + GFF2593 0.25 +0.9 186,924 + GFF2593 0.25 -0.2 186,925 - GFF2593 0.25 -0.6 186,925 - GFF2593 0.25 -0.9 186,925 - GFF2593 0.25 +0.5 186,925 - GFF2593 0.25 -0.0 187,089 + GFF2593 0.62 -0.2 187,090 - GFF2593 0.62 -0.2 187,358 + +0.5 187,358 + -0.1 187,358 + -0.0 187,359 + +0.2 187,359 - -0.2 187,359 - +0.0 187,359 - -0.2 187,374 - -0.1 187,376 + -0.3 187,377 - +0.7 187,377 - -0.8 187,493 + GFF2594 0.17 +0.2 187,493 + GFF2594 0.17 -0.3 187,494 - GFF2594 0.17 -1.1 187,512 - GFF2594 0.18 -0.5
Or see this region's nucleotide sequence