Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2453

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
33,201	+				+0.4
33,201	+				-0.7
33,201	+				+0.6
33,201	+				-1.4
33,201	+				-0.1
33,202	-				+0.1
33,202	-				-0.5
33,202	-				+0.1
33,202	-				+0.6
33,224	-				+1.1
33,303	+				+1.1
33,304	-				+0.1
34,510	-		GFF2453	0.23	+0.2
34,608	+		GFF2453	0.30	+0.5
34,608	+		GFF2453	0.30	+0.8
34,609	-		GFF2453	0.30	+0.4
34,609	-		GFF2453	0.30	+0.4
35,192	-		GFF2453	0.67	-0.1
35,846	+				-0.5
35,846	+				-0.9
35,847	-				+0.1
35,891	+				-0.5
35,891	+				+0.2
35,891	+				+0.6
35,891	+				-0.4
35,891	+				-0.9
35,891	+				+0.1
35,892	-				+0.6
35,892	-				-1.4
35,939	+				-0.4
35,960	+				-0.8
35,960	+				-0.5
35,961	-				-0.5
35,961	-				+0.8